CircRNA Information

General Information
circRNA Basic Information
CircID chr1:66958059|66963160
Strand +
CircType exon
Host Gene ENSG00000198160.14;
Algorism find_circ;CIRI2;DCC;
Sequence GAAGGCGACATGCCAATTCATGAACTTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAAGAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATATAAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAGATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAGTAATATTGGTGTCTTATTTATTCTAGATAGTGAAGTAGAAGAAGAATCTGAAGAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAATTCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:66958059|66963160 hsa-miR-433-5p 0 0 1
chr1:66958059|66963160 hsa-miR-433-3p 0 0 1
chr1:66958059|66963160 hsa-miR-452-5p 0 0 1
chr1:66958059|66963160 hsa-miR-452-3p 0 0 1
chr1:66958059|66963160 hsa-miR-584-5p 0 0 1
chr1:66958059|66963160 hsa-miR-584-3p 0 0 1
chr1:66958059|66963160 hsa-miR-1272 1 1 1
chr1:66958059|66963160 hsa-miR-1278 0 0 1
chr1:66958059|66963160 hsa-miR-7-5p 0 1 1
chr1:66958059|66963160 hsa-miR-145-5p 0 1 1
chr1:66958059|66963160 hsa-miR-491-5p 0 0 1
chr1:66958059|66963160 hsa-miR-142-3p 0 0 1
chr1:66958059|66963160 hsa-miR-1273 0 0 1
chr1:66958059|66963160 hsa-miR-549 0 0 1
chr1:66958059|66963160 hsa-miR-184 1 0 0
chr1:66958059|66963160 hsa-miR-583 1 0 0
chr1:66958059|66963160 hsa-miR-765 1 1 0
chr1:66958059|66963160 hsa-miR-1270 1 1 0
chr1:66958059|66963160 hsa-miR-1322 1 0 0
chr1:66958059|66963160 hsa-miR-3125 1 1 0
chr1:66958059|66963160 hsa-miR-3132 1 0 0
chr1:66958059|66963160 hsa-miR-3154 1 0 0
chr1:66958059|66963160 hsa-miR-3185 1 0 0
chr1:66958059|66963160 hsa-miR-4271 1 1 0
chr1:66958059|66963160 hsa-miR-3609 1 0 0
chr1:66958059|66963160 hsa-miR-3916 1 1 0
chr1:66958059|66963160 hsa-miR-4428 1 0 0
chr1:66958059|66963160 hsa-miR-4458 1 0 0
chr1:66958059|66963160 hsa-miR-4476 1 0 0
chr1:66958059|66963160 hsa-miR-4502 1 1 0
chr1:66958059|66963160 hsa-miR-2392 1 0 0
chr1:66958059|66963160 hsa-miR-4510 1 0 0
chr1:66958059|66963160 hsa-miR-4516 1 0 0
chr1:66958059|66963160 hsa-miR-4526 1 0 0
chr1:66958059|66963160 hsa-miR-4647 1 1 0
chr1:66958059|66963160 hsa-miR-4657 1 0 0
chr1:66958059|66963160 hsa-miR-4688 1 0 0
chr1:66958059|66963160 hsa-miR-4689 1 0 0
chr1:66958059|66963160 hsa-miR-4710 1 0 0
chr1:66958059|66963160 hsa-miR-4739 0 1 0
chr1:66958059|66963160 hsa-miR-5093 1 0 0
chr1:66958059|66963160 hsa-miR-5191 1 0 0
chr1:66958059|66963160 hsa-miR-5703 1 0 0
chr1:66958059|66963160 hsa-miR-5787 1 0 0
chr1:66958059|66963160 hsa-miR-6088 1 0 0
chr1:66958059|66963160 hsa-miR-6124 1 0 0
chr1:66958059|66963160 hsa-miR-6127 1 0 0
chr1:66958059|66963160 hsa-miR-6129 1 0 0
chr1:66958059|66963160 hsa-miR-6130 1 0 0
chr1:66958059|66963160 hsa-miR-6133 1 0 0
chr1:66958059|66963160 hsa-miR-6165 1 0 0
chr1:66958059|66963160 hsa-miR-8085 1 0 0
chr1:66958059|66963160 hsa-miR-9500 1 0 0
chr1:66958059|66963160 hsa-miR-12114 1 1 0
chr1:66958059|66963160 hsa-miR-12118 1 0 0
chr1:66958059|66963160 hsa-miR-4433b-3p 1 0 0
chr1:66958059|66963160 hsa-miR-4433a-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6765-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6894-5p 1 0 0
chr1:66958059|66963160 hsa-miR-125a-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6510-5p 1 0 0
chr1:66958059|66963160 hsa-miR-766-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6833-5p 1 0 0
chr1:66958059|66963160 hsa-miR-5187-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6873-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6880-5p 1 0 0
chr1:66958059|66963160 hsa-miR-7847-3p 1 0 0
chr1:66958059|66963160 hsa-miR-4695-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6744-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6746-5p 1 0 0
chr1:66958059|66963160 hsa-miR-4709-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6890-5p 1 0 0
chr1:66958059|66963160 hsa-miR-197-5p 1 0 0
chr1:66958059|66963160 hsa-miR-3682-3p 1 0 0
chr1:66958059|66963160 hsa-miR-3605-5p 1 0 0
chr1:66958059|66963160 hsa-miR-1224-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6760-5p 1 1 0
chr1:66958059|66963160 hsa-miR-1226-5p 1 0 0
chr1:66958059|66963160 hsa-miR-3691-5p 1 0 0
chr1:66958059|66963160 hsa-miR-3202 1 0 0
chr1:66958059|66963160 hsa-miR-6834-5p 1 0 0
chr1:66958059|66963160 hsa-miR-7154-5p 0 1 0
chr1:66958059|66963160 hsa-miR-6878-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6743-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6851-5p 1 0 0
chr1:66958059|66963160 hsa-miR-11181-3p 1 0 0
chr1:66958059|66963160 hsa-miR-1249-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6788-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6780b-5p 1 0 0
chr1:66958059|66963160 hsa-miR-675-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6858-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6831-5p 1 1 0
chr1:66958059|66963160 hsa-miR-1910-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6511a-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6731-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6856-5p 1 0 0
chr1:66958059|66963160 hsa-miR-3173-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6876-5p 1 0 0
chr1:66958059|66963160 hsa-miR-6891-5p 1 0 0
chr1:66958059|66963160 hsa-miR-4716-3p 1 0 0
chr1:66958059|66963160 hsa-miR-6884-5p 1 0 0
chr1:66958059|66963160 hsa-miR-487b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:66958059|66963160
ORF Type ORF1
Protein Length 150
Nucleotide Length 450
Protein Sequence MPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTSNIGVLFILDSEVEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEK
Nucleotide Sequence ATGCCAATTCATGAACTTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAAGAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATATAAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAGATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAGTAATATTGGTGTCTTATTTATTCTAGATAGTGAAGTAGAAGAAGAATCTGAAGAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAATTCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAA
CircID chr1:66958059|66963160
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MDHHWKTEFHPPDLMNPLYSPLYFPHYSHCCHHYQHLHHLHLLLPLLPLPHLLQVVEQYYHNHKG*
Nucleotide Sequence ATGGATCATCATTGGAAGACTGAGTTTCATCCTCCTGACCTGATGAATCCTTTATATTCTCCTCTTTATTTTCCCCACTACAGCCACTGTTGTCATCATTATCAGCATCTTCATCATCTTCACCTTCTTCTTCCTCTTCTTCCTCTTCCTCATCTTCTTCAGGTAGTCGAACAGTACTACCATAACCATAAAGGCTGA
CircID chr1:66958059|66963160
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MNFSAFMVMVVLFDYLKKMRKRKKRKKKVKMMKMLIMMTTVAVVGKIKRRI*
Nucleotide Sequence ATGAACTTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAAGAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATATAA
CircID chr1:66958059|66963160
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MKIIFHQKTGKRRLWWAPCFKQKFQLAFVDTKKMKK
Nucleotide Sequence ATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAATTCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAG
CircID chr1:66958059|66963160
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MLSSLSASSSSSPSSSSSSSSSSSSGSRTVLP
Nucleotide Sequence CTGTTGTCATCATTATCAGCATCTTCATCATCTTCACCTTCTTCTTCCTCTTCTTCCTCTTCCTCATCTTCTTCAGGTAGTCGAACAGTACTACCATAA
CircID chr1:66958059|66963160
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKKK
Nucleotide Sequence ATGCCAATTCATGAACTTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAAGAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAAAAAAG
CircID chr1:66958059|66963160
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MNFSAFMVMVVLFDYLKKMRKRKKRKKKVKMMKMLIMMTTVAVVGKIKK
Nucleotide Sequence ATGAACTTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAAGAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAAAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:66958059|66963160 UCHL5 0 1 0
chr1:66958059|66963160 FMR1 0 0 5
chr1:66958059|66963160 NOP56 2 2 1
chr1:66958059|66963160 ELAVL1 23 16 4
chr1:66958059|66963160 NCBP3 0 1 1
chr1:66958059|66963160 FAM120A 0 0 1
chr1:66958059|66963160 SSB 0 1 0
chr1:66958059|66963160 PRPF8 1 4 2
chr1:66958059|66963160 UPF1 2 0 0
chr1:66958059|66963160 SRSF10 0 0 2
chr1:66958059|66963160 TAF15 1 3 0
chr1:66958059|66963160 CPSF7 1 2 2
chr1:66958059|66963160 CPSF6 1 11 10
chr1:66958059|66963160 NUDT21 1 2 1
chr1:66958059|66963160 TIA1 2 0 0
chr1:66958059|66963160 CPSF3 0 1 0
chr1:66958059|66963160 RBM15B 0 16 0
chr1:66958059|66963160 CPSF1 1 0 0
chr1:66958059|66963160 FUS 3 0 0
chr1:66958059|66963160 GNL3 0 1 0
chr1:66958059|66963160 DGCR8 0 0 3
chr1:66958059|66963160 SRSF7 0 0 3
chr1:66958059|66963160 SRSF1 7 5 7
chr1:66958059|66963160 NOP58 0 0 6
chr1:66958059|66963160 DHX9 0 2 0
chr1:66958059|66963160 U2AF1 7 0 5
chr1:66958059|66963160 ADAR 0 1 0
chr1:66958059|66963160 U2AF2 48 40 9
chr1:66958059|66963160 SRSF9 0 0 2
chr1:66958059|66963160 DDX54 1 0 14
chr1:66958059|66963160 DDX55 0 1 0
chr1:66958059|66963160 EFTUD2 0 5 0
chr1:66958059|66963160 YTHDF2 0 1 0
chr1:66958059|66963160 RBM10 4 0 0
chr1:66958059|66963160 HNRNPM 8 1 0
chr1:66958059|66963160 RBM15 0 20 0
chr1:66958059|66963160 FIP1L1 3 4 0
chr1:66958059|66963160 PTBP1 6 6 3
chr1:66958059|66963160 HNRNPC 80 53 21
chr1:66958059|66963160 TRA2A 1 0 12
chr1:66958059|66963160 HNRNPA2B1 1 0 0
chr1:66958059|66963160 ZNF184 0 0 7
chr1:66958059|66963160 ACIN1 2 0 13
chr1:66958059|66963160 DDX3X 2 2 0
chr1:66958059|66963160 ZC3H7B 0 0 1
chr1:66958059|66963160 STAU1 5 0 0
chr1:66958059|66963160 SMNDC1 2 0 2
chr1:66958059|66963160 MSI2 0 0 1
chr1:66958059|66963160 HNRNPA1 12 5 1
chr1:66958059|66963160 LIN28B 1 1 4
chr1:66958059|66963160 QKI 0 1 0
chr1:66958059|66963160 FXR1 0 0 1
chr1:66958059|66963160 FXR2 1 0 0
chr1:66958059|66963160 RBFOX2 1 0 0
chr1:66958059|66963160 IGF2BP1 0 0 1
chr1:66958059|66963160 IGF2BP3 0 0 1
chr1:66958059|66963160 IGF2BP2 1 2 10
chr1:66958059|66963160 ELAVL3 1 1 0
chr1:66958059|66963160 TARDBP 8 8 4
chr1:66958059|66963160 YTHDC1 4 10 1
chr1:66958059|66963160 BUD13 1 0 5
chr1:66958059|66963160 KHSRP 2 0 2
chr1:66958059|66963160 RBM47 1 0 3
chr1:66958059|66963160 EIF4G2 2 0 2
chr1:66958059|66963160 CSTF2T 1 2 3
chr1:66958059|66963160 SRRM4 2 3 0
chr1:66958059|66963160 CSTF2 2 2 0
chr1:66958059|66963160 NONO 1 0 0
chr1:66958059|66963160 RBM22 0 1 0
chr1:66958059|66963160 TIAL1 2 1 0
chr1:66958059|66963160 ALKBH5 1 0 0
chr1:66958059|66963160 ATXN2 0 1 0
chr1:66958059|66963160 EIF4A3 2 2 8
chr1:66958059|66963160 FBL 0 1 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab