CircRNA Information

General Information
circRNA Basic Information
CircID chr1:85582194|85582585
Strand +
CircType exon
Host Gene ENSG00000142871.14;
Algorism CIRI2;
Sequence CTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGGAGATACCAGTTCCACAGGTCTTTGAGCACTGGGACCATGAAGTTGTTTGAACAATACATTTCTGGCCTTGTAAAGGGTTGTATAGGATGCGAGGCTCCATTCCAAAAACTAGAGACATATAAGAGGGAAGACTTCTCAGAGGCATACCGACACAAACAGGCTCAAGCACTCATTTCTACAAAGATTTAGACCAGAAATGCATCTCAGTACAGTGTCTGAAGTGCTCAGTCTCCACTTACCAGGGAGCCGCTTCAGTGAGCTGCCTTTTCCAACTGCAATCAATTCATTGTTTCTCGTCAACTCCACCTCGGAGGCATCGAATCCCAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:85582194|85582585 hsa-miR-143-5p 0 0 1
chr1:85582194|85582585 hsa-miR-143-3p 0 0 1
chr1:85582194|85582585 hsa-miR-206 -5 0 1
chr1:85582194|85582585 hsa-miR-381-5p 0 0 1
chr1:85582194|85582585 hsa-miR-381-3p 0 0 1
chr1:85582194|85582585 hsa-miR-520f-5p 0 0 1
chr1:85582194|85582585 hsa-miR-520f-3p 0 0 1
chr1:85582194|85582585 hsa-miR-586 -6 0 1
chr1:85582194|85582585 hsa-miR-592 -8 0 1
chr1:85582194|85582585 hsa-miR-593-5p 0 0 1
chr1:85582194|85582585 hsa-miR-593-3p 0 0 1
chr1:85582194|85582585 hsa-miR-599 -3 0 1
chr1:85582194|85582585 hsa-miR-601 -12 0 1
chr1:85582194|85582585 hsa-miR-613 -6 0 1
chr1:85582194|85582585 hsa-miR-624-5p 0 0 1
chr1:85582194|85582585 hsa-miR-624-3p 0 0 1
chr1:85582194|85582585 hsa-miR-636 -10 0 1
chr1:85582194|85582585 hsa-miR-758-5p 0 0 1
chr1:85582194|85582585 hsa-miR-758-3p 0 0 1
chr1:85582194|85582585 hsa-miR-1264 -8 0 1
chr1:85582194|85582585 hsa-miR-300 -8 0 1
chr1:85582194|85582585 hsa-miR-1251-5p 0 0 1
chr1:85582194|85582585 hsa-miR-1251-3p 0 0 1
chr1:85582194|85582585 hsa-miR-1253 -7 0 1
chr1:85582194|85582585 hsa-miR-1284 -8 1 1
chr1:85582194|85582585 hsa-miR-1324 -4 0 1
chr1:85582194|85582585 hsa-miR-1825 -7 0 1
chr1:85582194|85582585 hsa-miR-532-5p -9 0 1
chr1:85582194|85582585 hsa-miR-654-3p -7 0 1
chr1:85582194|85582585 hsa-miR-337-3p -6 0 1
chr1:85582194|85582585 hsa-miR-125a-5p -13 0 1
chr1:85582194|85582585 hsa-miR-582-3p -2 0 1
chr1:85582194|85582585 hsa-miR-125b 0 0 1
chr1:85582194|85582585 hsa-miR-642 0 0 1
chr1:85582194|85582585 hsa-miR-1300 0 0 1
chr1:85582194|85582585 hsa-miR-1 0 0 1
chr1:85582194|85582585 hsa-miR-219-2-3p 0 0 1
chr1:85582194|85582585 hsa-miR-371-3p 0 0 1
chr1:85582194|85582585 hsa-miR-219-1-3p 0 0 1
chr1:85582194|85582585 hsa-miR-549 0 0 1
chr1:85582194|85582585 hsa-miR-1259 0 0 1
chr1:85582194|85582585 hsa-miR-2861 1 0 0
chr1:85582194|85582585 hsa-miR-4292 1 0 0
chr1:85582194|85582585 hsa-miR-3921 -14 1 0
chr1:85582194|85582585 hsa-miR-4449 1 0 0
chr1:85582194|85582585 hsa-miR-4490 -12 1 0
chr1:85582194|85582585 hsa-miR-4491 0 1 0
chr1:85582194|85582585 hsa-miR-4512 1 0 0
chr1:85582194|85582585 hsa-miR-4515 1 0 0
chr1:85582194|85582585 hsa-miR-6086 1 0 0
chr1:85582194|85582585 hsa-miR-12114 -12 1 0
chr1:85582194|85582585 hsa-miR-12115 -14 1 0
chr1:85582194|85582585 hsa-miR-6765-5p 1 0 0
chr1:85582194|85582585 hsa-miR-486-5p -13 1 0
chr1:85582194|85582585 hsa-miR-7114-5p -8 1 0
chr1:85582194|85582585 hsa-miR-6757-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6880-5p -17 1 0
chr1:85582194|85582585 hsa-miR-7847-3p 1 0 0
chr1:85582194|85582585 hsa-miR-6741-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6806-5p 1 0 0
chr1:85582194|85582585 hsa-miR-3663-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6735-3p 1 0 0
chr1:85582194|85582585 hsa-miR-615-5p 1 0 0
chr1:85582194|85582585 hsa-miR-1909-5p 1 0 0
chr1:85582194|85582585 hsa-miR-185-5p 1 0 0
chr1:85582194|85582585 hsa-miR-4640-5p 1 0 0
chr1:85582194|85582585 hsa-miR-30c-2-3p 1 0 0
chr1:85582194|85582585 hsa-miR-6749-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6830-3p 1 0 0
chr1:85582194|85582585 hsa-miR-1266-3p 1 0 0
chr1:85582194|85582585 hsa-miR-1304-3p -6 1 0
chr1:85582194|85582585 hsa-miR-199a-5p -16 1 0
chr1:85582194|85582585 hsa-miR-574-5p 1 0 0
chr1:85582194|85582585 hsa-miR-3922-5p -23 1 0
chr1:85582194|85582585 hsa-miR-873-3p -2 1 0
chr1:85582194|85582585 hsa-miR-6513-5p -10 1 0
chr1:85582194|85582585 hsa-miR-2276-5p 1 0 0
chr1:85582194|85582585 hsa-miR-371a-3p -13 1 0
chr1:85582194|85582585 hsa-miR-4746-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6857-3p -7 1 0
chr1:85582194|85582585 hsa-miR-642a-5p -15 1 0
chr1:85582194|85582585 hsa-miR-199b-5p -11 1 0
chr1:85582194|85582585 hsa-let-7b-3p -6 1 0
chr1:85582194|85582585 hsa-miR-4755-5p 1 0 0
chr1:85582194|85582585 hsa-miR-449c-5p -16 1 0
chr1:85582194|85582585 hsa-miR-1238-5p 1 0 0
chr1:85582194|85582585 hsa-miR-4758-5p 1 0 0
chr1:85582194|85582585 hsa-miR-4747-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6791-5p 1 0 0
chr1:85582194|85582585 hsa-miR-6823-3p 1 0 0
chr1:85582194|85582585 hsa-miR-619-5p -10 1 0
chr1:85582194|85582585 hsa-miR-6814-3p -18 1 0
chr1:85582194|85582585 hsa-miR-4653-5p -8 1 0
chr1:85582194|85582585 hsa-miR-125b-5p -15 1 0
chr1:85582194|85582585 hsa-let-7f-1-3p -4 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:85582194|85582585
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MHLSTVSEVLSLHLPGSRFSELPFPTAINSLFLVNSTSEASNPS
Nucleotide Sequence ATGCATCTCAGTACAGTGTCTGAAGTGCTCAGTCTCCACTTACCAGGGAGCCGCTTCAGTGAGCTGCCTTTTCCAACTGCAATCAATTCATTGTTTCTCGTCAACTCCACCTCGGAGGCATCGAATCCCAGC
CircID chr1:85582194|85582585
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MKCSVSTYQGAASVSCLFQLQSIHCFSSTPPRRHRIPA
Nucleotide Sequence CTGAAGTGCTCAGTCTCCACTTACCAGGGAGCCGCTTCAGTGAGCTGCCTTTTCCAACTGCAATCAATTCATTGTTTCTCGTCAACTCCACCTCGGAGGCATCGAATCCCAGCT
CircID chr1:85582194|85582585
ORF Type ORF3
Protein Length 55
Nucleotide Length 168
Protein Sequence MSTGTMKLFEQYISGLVKGCIGCEAPFQKLETYKREDFSEAYRHKQAQALISTKI
Nucleotide Sequence TTGAGCACTGGGACCATGAAGTTGTTTGAACAATACATTTCTGGCCTTGTAAAGGGTTGTATAGGATGCGAGGCTCCATTCCAAAAACTAGAGACATATAAGAGGGAAGACTTCTCAGAGGCATACCGACACAAACAGGCTCAAGCACTCATTTCTACAAAGATTTAG
CircID chr1:85582194|85582585
ORF Type ORF4
Protein Length 63
Nucleotide Length 192
Protein Sequence MGFDASEVELTRNNELIAVGKGSSLKRLPGKWRLSTSDTVLRCISGLNLCRNECLSLFVSVCL
Nucleotide Sequence CTGGGATTCGATGCCTCCGAGGTGGAGTTGACGAGAAACAATGAATTGATTGCAGTTGGAAAAGGCAGCTCACTGAAGCGGCTCCCTGGTAAGTGGAGACTGAGCACTTCAGACACTGTACTGAGATGCATTTCTGGTCTAAATCTTTGTAGAAATGAGTGCTTGAGCCTGTTTGTGTCGGTATGCCTCTGA
CircID chr1:85582194|85582585
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MEWSLASYTTLYKARNVLFKQLHGPSAQRPVELVSPHELPMTTLSAAL
Nucleotide Sequence TTGGAATGGAGCCTCGCATCCTATACAACCCTTTACAAGGCCAGAAATGTATTGTTCAAACAACTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTGGTATCTCCACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGA
CircID chr1:85582194|85582585
ORF Type ORF6
Protein Length 57
Nucleotide Length 174
Protein Sequence MCRYASEKSSLLYVSSFWNGASHPIQPFTRPEMYCSNNFMVPVLKDLWNWYLHTSYQ
Nucleotide Sequence TTGTGTCGGTATGCCTCTGAGAAGTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCTCGCATCCTATACAACCCTTTACAAGGCCAGAAATGTATTGTTCAAACAACTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTGGTATCTCCACACGAGTTACCAATGA
CircID chr1:85582194|85582585
ORF Type ORF7
Protein Length 69
Nucleotide Length 207
Protein Sequence MPLRSLPSYMSLVFGMEPRILYNPLQGQKCIVQTTSWSQCSKTCGTGISTRVTNDNPECRLVKETRICE
Nucleotide Sequence ATGCCTCTGAGAAGTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCTCGCATCCTATACAACCCTTTACAAGGCCAGAAATGTATTGTTCAAACAACTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTGGTATCTCCACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab