CircRNA Information

General Information
circRNA Basic Information
CircID chr1:944392|944573
Strand +
CircType exon
Host Gene ENSG00000187634.9;
Algorism CIRI2;
Sequence AGGCTTTATTATTTATTTTTCAGCATGAAAGACCAAACGTATCGAGAGCTGGGCTGGGCTGGGCTGGTGTGGCTGCTGAAGCCCCACAGCTGTGGGCTGCTGAAGTCAGCTCCGCGGGGGAGCTGACCCTGACGTCAGCAGACCGAGACCAGTCCCAGTTCCAGGGGGAGGCCTGCAGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:944392|944573 hsa-miR-214-5p 0 0 1
chr1:944392|944573 hsa-miR-214-3p 0 0 1
chr1:944392|944573 hsa-miR-133b 0 0 1
chr1:944392|944573 hsa-miR-617 0 0 1
chr1:944392|944573 hsa-miR-922 0 0 1
chr1:944392|944573 hsa-miR-1226-5p 0 0 1
chr1:944392|944573 hsa-miR-1226-3p 0 0 1
chr1:944392|944573 hsa-miR-1205 0 1 1
chr1:944392|944573 hsa-miR-491-5p 0 0 1
chr1:944392|944573 hsa-miR-331-3p 0 0 1
chr1:944392|944573 hsa-miR-628-5p 0 0 1
chr1:944392|944573 hsa-miR-133a 0 0 1
chr1:944392|944573 hsa-miR-602 1 0 0
chr1:944392|944573 hsa-miR-608 1 0 0
chr1:944392|944573 hsa-miR-1299 1 0 0
chr1:944392|944573 hsa-miR-4291 0 1 0
chr1:944392|944573 hsa-miR-4515 0 1 0
chr1:944392|944573 hsa-miR-4734 1 0 0
chr1:944392|944573 hsa-miR-5685 1 1 0
chr1:944392|944573 hsa-miR-6075 1 0 0
chr1:944392|944573 hsa-miR-8075 0 1 0
chr1:944392|944573 hsa-miR-9718 0 1 0
chr1:944392|944573 hsa-miR-134-3p 0 1 0
chr1:944392|944573 hsa-miR-93-3p 0 1 0
chr1:944392|944573 hsa-miR-1247-3p 1 0 0
chr1:944392|944573 hsa-miR-4665-3p 1 0 0
chr1:944392|944573 hsa-miR-1972 1 0 0
chr1:944392|944573 hsa-miR-766-3p 1 0 0
chr1:944392|944573 hsa-miR-7851-3p 1 0 0
chr1:944392|944573 hsa-miR-593-5p 1 0 0
chr1:944392|944573 hsa-miR-1178-5p 0 1 0
chr1:944392|944573 hsa-miR-6849-3p 1 0 0
chr1:944392|944573 hsa-miR-3663-5p 0 1 0
chr1:944392|944573 hsa-miR-6796-5p 0 1 0
chr1:944392|944573 hsa-miR-185-3p 0 1 0
chr1:944392|944573 hsa-miR-6735-3p 1 1 0
chr1:944392|944573 hsa-miR-6858-3p 1 0 0
chr1:944392|944573 hsa-miR-939-3p 1 0 0
chr1:944392|944573 hsa-miR-4763-5p 1 0 0
chr1:944392|944573 hsa-miR-4707-3p 1 0 0
chr1:944392|944573 hsa-miR-3160-3p 0 1 0
chr1:944392|944573 hsa-miR-3940-3p 1 1 0
chr1:944392|944573 hsa-miR-449b-3p 0 1 0
chr1:944392|944573 hsa-miR-1228-3p 1 0 0
chr1:944392|944573 hsa-miR-4650-5p 0 1 0
chr1:944392|944573 hsa-miR-5001-5p 1 0 0
chr1:944392|944573 hsa-miR-6726-5p 1 0 0
chr1:944392|944573 hsa-miR-6511b-5p 1 0 0
chr1:944392|944573 hsa-miR-6799-3p 1 0 0
chr1:944392|944573 hsa-miR-1199-5p 1 0 0
chr1:944392|944573 hsa-miR-3116 1 0 0
chr1:944392|944573 hsa-miR-6791-5p 1 1 0
chr1:944392|944573 hsa-miR-10392-3p 1 0 0
chr1:944392|944573 hsa-miR-10394-5p 0 1 0
chr1:944392|944573 hsa-miR-3619-5p 1 0 0
chr1:944392|944573 hsa-miR-4690-3p 1 1 0
chr1:944392|944573 hsa-miR-6811-5p 0 1 0
chr1:944392|944573 hsa-miR-3913-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:944392|944573
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MKDQTYRELGWAGLVWLLKPHSCGLLKSAPRGS
Nucleotide Sequence ATGAAAGACCAAACGTATCGAGAGCTGGGCTGGGCTGGGCTGGTGTGGCTGCTGAAGCCCCACAGCTGTGGGCTGCTGAAGTCAGCTCCGCGGGGGAGCTGA
CircID chr1:944392|944573
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MGWAGVAAEAPQLWAAEVSSAGELTLTSADRDQSQFQGEACRP
Nucleotide Sequence CTGGGCTGGGCTGGTGTGGCTGCTGAAGCCCCACAGCTGTGGGCTGCTGAAGTCAGCTCCGCGGGGGAGCTGACCCTGACGTCAGCAGACCGAGACCAGTCCCAGTTCCAGGGGGAGGCCTGCAGGCCC
CircID chr1:944392|944573
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MWGFSSHTSPAQPSSRYVWSFMLKNK
Nucleotide Sequence CTGTGGGGCTTCAGCAGCCACACCAGCCCAGCCCAGCCCAGCTCTCGATACGTTTGGTCTTTCATGCTGAAAAATAAATAA
CircID chr1:944392|944573
ORF Type ORF4
Protein Length 52
Nucleotide Length 159
Protein Sequence MQASPWNWDWSRSADVRVSSPAELTSAAHSCGASAATPAQPSPALDTFGLSC
Nucleotide Sequence CTGCAGGCCTCCCCCTGGAACTGGGACTGGTCTCGGTCTGCTGACGTCAGGGTCAGCTCCCCCGCGGAGCTGACTTCAGCAGCCCACAGCTGTGGGGCTTCAGCAGCCACACCAGCCCAGCCCAGCCCAGCTCTCGATACGTTTGGTCTTTCATGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab