CircRNA Information

General Information
circRNA Basic Information
CircID chr1:9729642|9729801
Strand -
CircType exon
Host Gene ENSG00000171603.15;
Algorism CIRI2;
Sequence GGTGAGACCAGGCCACTGCCCAGGGAGCTGCTGTCGGAGGAGGAGTGTGGAAAAGGGGCCAGGGACCCCGCACCCCACACCAAATTAGGAACAGGTAGAATCCCAAAGGCAAGGCCCGGCCACTTGTAGCTACCCTGATCCAGTCTCTTGAGCAGCACAG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:9729642|9729801 hsa-miR-34a-5p 0 0 1
chr1:9729642|9729801 hsa-miR-34a-3p 0 0 1
chr1:9729642|9729801 hsa-miR-335-5p 0 0 1
chr1:9729642|9729801 hsa-miR-335-3p 0 0 1
chr1:9729642|9729801 hsa-miR-449a 0 0 1
chr1:9729642|9729801 hsa-miR-608 0 0 1
chr1:9729642|9729801 hsa-miR-612 1 1 1
chr1:9729642|9729801 hsa-miR-646 0 1 1
chr1:9729642|9729801 hsa-miR-449b-5p 0 0 1
chr1:9729642|9729801 hsa-miR-449b-3p 0 0 1
chr1:9729642|9729801 hsa-miR-675-5p 0 0 1
chr1:9729642|9729801 hsa-miR-675-3p 0 0 1
chr1:9729642|9729801 hsa-miR-744-5p 0 0 1
chr1:9729642|9729801 hsa-miR-744-3p 0 0 1
chr1:9729642|9729801 hsa-miR-1229-5p 0 0 1
chr1:9729642|9729801 hsa-miR-1229-3p 0 0 1
chr1:9729642|9729801 hsa-miR-1243 0 0 1
chr1:9729642|9729801 hsa-miR-491-5p 0 0 1
chr1:9729642|9729801 hsa-miR-615-5p 0 1 1
chr1:9729642|9729801 hsa-miR-767-3p 0 0 1
chr1:9729642|9729801 hsa-miR-342-5p 0 0 1
chr1:9729642|9729801 hsa-miR-769-3p 1 0 1
chr1:9729642|9729801 hsa-miR-483-3p 0 1 1
chr1:9729642|9729801 hsa-miR-34c-5p 0 0 1
chr1:9729642|9729801 hsa-miR-450b-3p 0 0 1
chr1:9729642|9729801 hsa-miR-1285 0 0 1
chr1:9729642|9729801 hsa-miR-663a 1 0 0
chr1:9729642|9729801 hsa-miR-762 1 0 0
chr1:9729642|9729801 hsa-miR-663b 1 1 0
chr1:9729642|9729801 hsa-miR-1204 0 1 0
chr1:9729642|9729801 hsa-miR-1303 1 0 0
chr1:9729642|9729801 hsa-miR-4292 1 1 0
chr1:9729642|9729801 hsa-miR-4463 1 1 0
chr1:9729642|9729801 hsa-miR-4492 1 0 0
chr1:9729642|9729801 hsa-miR-4526 1 0 0
chr1:9729642|9729801 hsa-miR-4660 0 1 0
chr1:9729642|9729801 hsa-miR-5192 1 0 0
chr1:9729642|9729801 hsa-miR-5193 0 1 0
chr1:9729642|9729801 hsa-miR-5572 1 1 0
chr1:9729642|9729801 hsa-miR-6860 1 1 0
chr1:9729642|9729801 hsa-miR-1287-5p 0 1 0
chr1:9729642|9729801 hsa-miR-149-5p 0 1 0
chr1:9729642|9729801 hsa-miR-3692-3p 0 1 0
chr1:9729642|9729801 hsa-miR-6089 1 0 0
chr1:9729642|9729801 hsa-miR-3677-5p 1 1 0
chr1:9729642|9729801 hsa-miR-1301-3p 0 1 0
chr1:9729642|9729801 hsa-miR-6875-3p 1 0 0
chr1:9729642|9729801 hsa-miR-6727-5p 1 0 0
chr1:9729642|9729801 hsa-miR-1915-5p 1 1 0
chr1:9729642|9729801 hsa-miR-6832-3p 0 1 0
chr1:9729642|9729801 hsa-miR-7108-5p 1 0 0
chr1:9729642|9729801 hsa-miR-6742-5p 0 1 0
chr1:9729642|9729801 hsa-miR-6796-5p 0 1 0
chr1:9729642|9729801 hsa-miR-185-3p 1 0 0
chr1:9729642|9729801 hsa-miR-2277-3p 1 0 0
chr1:9729642|9729801 hsa-miR-4640-5p 1 0 0
chr1:9729642|9729801 hsa-miR-7113-3p 0 1 0
chr1:9729642|9729801 hsa-miR-3677-3p 1 0 0
chr1:9729642|9729801 hsa-miR-6749-5p 1 1 0
chr1:9729642|9729801 hsa-miR-937-5p 1 0 0
chr1:9729642|9729801 hsa-miR-1199-3p 1 0 0
chr1:9729642|9729801 hsa-miR-4645-3p 1 0 0
chr1:9729642|9729801 hsa-miR-5587-3p 1 0 0
chr1:9729642|9729801 hsa-miR-196b-3p 0 1 0
chr1:9729642|9729801 hsa-miR-6816-5p 1 0 0
chr1:9729642|9729801 hsa-miR-6737-5p 0 1 0
chr1:9729642|9729801 hsa-miR-6819-5p 0 1 0
chr1:9729642|9729801 hsa-miR-6774-5p 1 0 0
chr1:9729642|9729801 hsa-miR-5189-5p 0 1 0
chr1:9729642|9729801 hsa-miR-10396b-5p 1 0 0
chr1:9729642|9729801 hsa-miR-4632-5p 1 0 0
chr1:9729642|9729801 hsa-miR-4745-5p 1 0 0
chr1:9729642|9729801 hsa-miR-3187-5p 0 1 0
chr1:9729642|9729801 hsa-miR-6855-5p 1 0 0
chr1:9729642|9729801 hsa-miR-6791-5p 0 1 0
chr1:9729642|9729801 hsa-miR-6781-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:9729642|9729801
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MPRELLSEEECGKGARDPAPHTKLGTGRIPKARPGHL
Nucleotide Sequence CTGCCCAGGGAGCTGCTGTCGGAGGAGGAGTGTGGAAAAGGGGCCAGGGACCCCGCACCCCACACCAAATTAGGAACAGGTAGAATCCCAAAGGCAAGGCCCGGCCACTTGTAG
CircID chr1:9729642|9729801
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence LCCSRDWIRVATSGRALPLGFYLFLIWCGVRGPWPLFHTPPPTAAPWAVAWSH
Nucleotide Sequence CTGTGCTGCTCAAGAGACTGGATCAGGGTAGCTACAAGTGGCCGGGCCTTGCCTTTGGGATTCTACCTGTTCCTAATTTGGTGTGGGGTGCGGGGTCCCTGGCCCCTTTTCCACACTCCTCCTCCGACAGCAGCTCCCTGGGCAGTGGCCTGGTCTCAC
CircID chr1:9729642|9729801
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MLKRLDQGSYKWPGLAFGILPVPNLVWGAGSLAPFPHSSSDSSSLGSGLVS
Nucleotide Sequence CTGCTCAAGAGACTGGATCAGGGTAGCTACAAGTGGCCGGGCCTTGCCTTTGGGATTCTACCTGTTCCTAATTTGGTGTGGGGTGCGGGGTCCCTGGCCCCTTTTCCACACTCCTCCTCCGACAGCAGCTCCCTGGGCAGTGGCCTGGTCTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab