CircRNA Information

General Information
circRNA Basic Information
CircID chr1:9931891|9934860
Strand -
CircType exon
Host Gene ENSG00000162441.11;
Algorism find_circ;CIRI2;DCC;
Sequence GCTATTCAGGCAGCTATCAGCCAGGCCTTTAAAACCCCAGAGGTCATCAGATTGTTTGCAAAGAAACAACCAGGTCAGCTTCGGACAAGGTTAGCAGAGGTAAAATTTCTTTAAATTGATTTGGTTGCTGTGTGTTTTTCATTTCCTAGGCCAATTCATTATGATATCCTATGGCTTAAAAATTTGCCAGGTGATTTTAGAGCCACAACTAACAATTTTCTGACAAAATTAGTACTTTGAGCAATTATAGTTGATAATGAATGTAGAGCTTTAAACAATATACGGCAGTTTAAATTGCCACTGACCACTTCTACCTGGACTCCACCTTTAATGTTTTACCATTTACTTCTGGAGCTCTAACTTAAAATCACATTGAGAATTAATTAGCAGCATTGCTTGTATGCATGTGTAGCCTATCTCATCTAAGAATTTCAAGTATCTTTGTAAACCTGATACTTCCAGAAGTCTGTTTATAGGCTTGGATGTAATTAAGAGTTACCAAATTATTTGTAAGTATGGGCAATTCAGTAGCATAGTGATTCAGAGCATGGACTTTGGTCAGACTGGCTGGATTTGAATTCCTGCTTCACTACTGAGATGGATAGAGATCTGATGGTAGGAAAGCTGGAAAGAGACCTGTACACTCAACAGAAAGTGGAGATACTAACAGCTCTTAGGAAACTTGGAGAGAAGCTGACTGCAGATGATGAGGCCTTCTTGTCAGCAAATGCAGGTGCTATACTCAGCCAGTTTGAGAAAGTCTCTACAGACCTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:9931891|9934860 hsa-miR-185-5p 0 0 1
chr1:9931891|9934860 hsa-miR-185-3p 0 0 1
chr1:9931891|9934860 hsa-miR-320a-5p 0 0 1
chr1:9931891|9934860 hsa-miR-320a-3p 0 0 1
chr1:9931891|9934860 hsa-miR-432-5p 0 0 1
chr1:9931891|9934860 hsa-miR-432-3p 0 0 1
chr1:9931891|9934860 hsa-miR-527 0 0 1
chr1:9931891|9934860 hsa-miR-510-5p 0 0 1
chr1:9931891|9934860 hsa-miR-510-3p 0 0 1
chr1:9931891|9934860 hsa-miR-539-5p 0 0 1
chr1:9931891|9934860 hsa-miR-539-3p 0 0 1
chr1:9931891|9934860 hsa-miR-545-5p 0 0 1
chr1:9931891|9934860 hsa-miR-545-3p 0 0 1
chr1:9931891|9934860 hsa-miR-575 0 0 1
chr1:9931891|9934860 hsa-miR-578 0 0 1
chr1:9931891|9934860 hsa-miR-580-5p 0 0 1
chr1:9931891|9934860 hsa-miR-580-3p 0 0 1
chr1:9931891|9934860 hsa-miR-620 0 0 1
chr1:9931891|9934860 hsa-miR-624-5p 0 0 1
chr1:9931891|9934860 hsa-miR-624-3p 0 0 1
chr1:9931891|9934860 hsa-miR-657 0 0 1
chr1:9931891|9934860 hsa-miR-421 0 0 1
chr1:9931891|9934860 hsa-miR-890 0 0 1
chr1:9931891|9934860 hsa-miR-1248 1 1 1
chr1:9931891|9934860 hsa-miR-1270 1 1 1
chr1:9931891|9934860 hsa-miR-1272 0 1 1
chr1:9931891|9934860 hsa-miR-9-5p 0 1 1
chr1:9931891|9934860 hsa-miR-139-5p 0 0 1
chr1:9931891|9934860 hsa-miR-512-5p 0 1 1
chr1:9931891|9934860 hsa-miR-486-5p 0 0 1
chr1:9931891|9934860 hsa-miR-769-5p 0 1 1
chr1:9931891|9934860 hsa-miR-181a-2-3p 0 1 1
chr1:9931891|9934860 hsa-miR-875-3p 0 0 1
chr1:9931891|9934860 hsa-miR-320b 0 1 1
chr1:9931891|9934860 hsa-miR-320c 0 1 1
chr1:9931891|9934860 hsa-miR-320d 0 1 1
chr1:9931891|9934860 hsa-miR-509-3-5p 0 0 1
chr1:9931891|9934860 hsa-miR-509-5p 0 0 1
chr1:9931891|9934860 hsa-miR-518a-5p 0 0 1
chr1:9931891|9934860 hsa-miR-450b-5p 0 0 1
chr1:9931891|9934860 hsa-miR-105 0 0 1
chr1:9931891|9934860 hsa-miR-1300 0 0 1
chr1:9931891|9934860 hsa-miR-764 0 1 0
chr1:9931891|9934860 hsa-miR-1183 1 1 0
chr1:9931891|9934860 hsa-miR-3132 1 0 0
chr1:9931891|9934860 hsa-miR-3142 0 1 0
chr1:9931891|9934860 hsa-miR-3153 1 0 0
chr1:9931891|9934860 hsa-miR-320e 0 1 0
chr1:9931891|9934860 hsa-miR-4311 0 1 0
chr1:9931891|9934860 hsa-miR-3937 1 1 0
chr1:9931891|9934860 hsa-miR-4429 0 1 0
chr1:9931891|9934860 hsa-miR-4496 1 1 0
chr1:9931891|9934860 hsa-miR-4526 1 0 0
chr1:9931891|9934860 hsa-miR-4660 1 0 0
chr1:9931891|9934860 hsa-miR-4689 1 0 0
chr1:9931891|9934860 hsa-miR-4710 1 0 0
chr1:9931891|9934860 hsa-miR-5192 1 0 0
chr1:9931891|9934860 hsa-miR-6079 1 0 0
chr1:9931891|9934860 hsa-miR-8075 1 0 0
chr1:9931891|9934860 hsa-miR-8085 1 0 0
chr1:9931891|9934860 hsa-miR-12115 1 1 0
chr1:9931891|9934860 hsa-miR-12117 0 1 0
chr1:9931891|9934860 hsa-miR-12131 0 1 0
chr1:9931891|9934860 hsa-miR-3157-5p 0 1 0
chr1:9931891|9934860 hsa-miR-6089 1 0 0
chr1:9931891|9934860 hsa-miR-6880-5p 1 0 0
chr1:9931891|9934860 hsa-miR-7847-3p 1 0 0
chr1:9931891|9934860 hsa-miR-4755-3p 0 1 0
chr1:9931891|9934860 hsa-miR-197-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6760-5p 1 0 0
chr1:9931891|9934860 hsa-miR-3156-5p 1 1 0
chr1:9931891|9934860 hsa-miR-1229-5p 1 0 0
chr1:9931891|9934860 hsa-miR-4640-5p 1 0 0
chr1:9931891|9934860 hsa-miR-296-3p 1 0 0
chr1:9931891|9934860 hsa-miR-6823-5p 1 1 0
chr1:9931891|9934860 hsa-miR-4733-3p 0 1 0
chr1:9931891|9934860 hsa-miR-4694-5p 0 1 0
chr1:9931891|9934860 hsa-miR-3158-5p 0 1 0
chr1:9931891|9934860 hsa-miR-7846-3p 1 0 0
chr1:9931891|9934860 hsa-miR-508-5p 0 1 0
chr1:9931891|9934860 hsa-miR-1251-3p 1 0 0
chr1:9931891|9934860 hsa-miR-4727-3p 1 0 0
chr1:9931891|9934860 hsa-miR-1245b-3p 0 1 0
chr1:9931891|9934860 hsa-miR-888-3p 0 1 0
chr1:9931891|9934860 hsa-miR-506-5p 0 1 0
chr1:9931891|9934860 hsa-miR-1207-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6769a-5p 1 0 0
chr1:9931891|9934860 hsa-miR-1249-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6780a-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6797-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6780b-5p 1 0 0
chr1:9931891|9934860 hsa-miR-939-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6758-5p 1 0 0
chr1:9931891|9934860 hsa-miR-6750-5p 0 1 0
chr1:9931891|9934860 hsa-miR-6884-5p 0 1 0
chr1:9931891|9934860 hsa-miR-4676-5p 0 1 0
chr1:9931891|9934860 hsa-miR-1245b-5p 0 1 0
chr1:9931891|9934860 hsa-miR-374a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:9931891|9934860
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MLVSPLSVECTGLFPAFLPSDLYPSLLTLSEADLVVSLQTI
Nucleotide Sequence CTGTTAGTATCTCCACTTTCTGTTGAGTGTACAGGTCTCTTTCCAGCTTTCCTACCATCAGATCTCTATCCATCTCTGCTAACCTTGTCCGAAGCTGACCTGGTTGTTTCTTTGCAAACAATCTGA
CircID chr1:9931891|9934860
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MTWLFLCKQSDDLWGFKGLADSCLNS
Nucleotide Sequence CTGACCTGGTTGTTTCTTTGCAAACAATCTGATGACCTCTGGGGTTTTAAAGGCCTGGCTGATAGCTGCCTGAATAGC
CircID chr1:9931891|9934860
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MSIAPAFADKKASSSAVSFSPSFLRAVSISTFC
Nucleotide Sequence CTGAGTATAGCACCTGCATTTGCTGACAAGAAGGCCTCATCATCTGCAGTCAGCTTCTCTCCAAGTTTCCTAAGAGCTGTTAGTATCTCCACTTTCTGTTGA
CircID chr1:9931891|9934860
ORF Type ORF4
Protein Length 75
Nucleotide Length 225
Protein Sequence MFAKKQPGQLRTRLAEMDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAILSQFEKVSTDL
Nucleotide Sequence TTGTTTGCAAAGAAACAACCAGGTCAGCTTCGGACAAGGTTAGCAGAGATGGATAGAGATCTGATGGTAGGAAAGCTGGAAAGAGACCTGTACACTCAACAGAAAGTGGAGATACTAACAGCTCTTAGGAAACTTGGAGAGAAGCTGACTGCAGATGATGAGGCCTTCTTGTCAGCAAATGCAGGTGCTATACTCAGCCAGTTTGAGAAAGTCTCTACAGACCTT
CircID chr1:9931891|9934860
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MQMMRPSCQQMQVLYSASLRKSLQTL
Nucleotide Sequence CTGCAGATGATGAGGCCTTCTTGTCAGCAAATGCAGGTGCTATACTCAGCCAGTTTGAGAAAGTCTCTACAGACCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:9931891|9934860 U2AF2 5 2 0
chr1:9931891|9934860 MOV10 4 0 2
chr1:9931891|9934860 ELAVL1 2 1 2
chr1:9931891|9934860 KHDRBS1 0 1 0
chr1:9931891|9934860 PRPF8 1 2 1
chr1:9931891|9934860 UPF1 3 0 0
chr1:9931891|9934860 FMR1 5 1 0
chr1:9931891|9934860 CPSF6 2 0 1
chr1:9931891|9934860 FUS 1 1 0
chr1:9931891|9934860 GNL3 2 0 1
chr1:9931891|9934860 SRSF1 3 0 3
chr1:9931891|9934860 NOP58 2 0 2
chr1:9931891|9934860 NOP56 0 0 1
chr1:9931891|9934860 SRSF9 0 0 1
chr1:9931891|9934860 HNRNPU 1 0 0
chr1:9931891|9934860 DDX54 4 0 0
chr1:9931891|9934860 RBM10 3 0 0
chr1:9931891|9934860 SF3A3 0 0 1
chr1:9931891|9934860 PTBP1 2 0 1
chr1:9931891|9934860 HNRNPC 0 2 0
chr1:9931891|9934860 TRA2A 1 0 0
chr1:9931891|9934860 ZNF184 3 0 0
chr1:9931891|9934860 HNRNPA1 0 1 0
chr1:9931891|9934860 DDX3X 2 0 0
chr1:9931891|9934860 MSI2 0 0 1
chr1:9931891|9934860 ACIN1 1 0 0
chr1:9931891|9934860 LIN28B 2 0 1
chr1:9931891|9934860 RANGAP1 0 0 1
chr1:9931891|9934860 FXR1 2 0 0
chr1:9931891|9934860 IGF2BP3 1 0 0
chr1:9931891|9934860 IGF2BP2 5 2 1
chr1:9931891|9934860 BUD13 2 1 1
chr1:9931891|9934860 CNBP 1 0 0
chr1:9931891|9934860 EIF4G2 1 0 0
chr1:9931891|9934860 CSTF2T 1 0 0
chr1:9931891|9934860 RBM22 0 0 1
chr1:9931891|9934860 XRN2 0 1 0
chr1:9931891|9934860 AGO2 0 0 2
chr1:9931891|9934860 EIF4A3 3 1 4
chr1:9931891|9934860 FBL 2 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab