CircRNA Information

General Information
circRNA Basic Information
CircID chr20:10639511|10639680
Strand -
CircType exon
Host Gene ENSG00000101384.10;
Algorism CIRI2;
Sequence TCCATTCGGTTTAAGCTCTGGGCACTTTCCAAGTCTCTGTTGTCCTGTTTGTTTGTCCAGTTTGGGTGTTTTGTCGGCGTGCCGTTGGGGGGCTTCTCTTCTCTGTCTACCAGCGTGTACGCCGGCTGCTTGGCAAACCGGGCTTTCTGCTGGTGTTTGTCCATGTCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:10639511|10639680 hsa-miR-17-5p 0 0 1
chr20:10639511|10639680 hsa-miR-17-3p 0 0 1
chr20:10639511|10639680 hsa-miR-20a-5p 0 0 1
chr20:10639511|10639680 hsa-miR-20a-3p 0 0 1
chr20:10639511|10639680 hsa-miR-93-5p 0 0 1
chr20:10639511|10639680 hsa-miR-93-3p 0 0 1
chr20:10639511|10639680 hsa-miR-106a-5p 0 0 1
chr20:10639511|10639680 hsa-miR-106a-3p 0 0 1
chr20:10639511|10639680 hsa-miR-106b-5p 0 0 1
chr20:10639511|10639680 hsa-miR-106b-3p 0 0 1
chr20:10639511|10639680 hsa-miR-379-5p 0 0 1
chr20:10639511|10639680 hsa-miR-379-3p 0 0 1
chr20:10639511|10639680 hsa-miR-20b-5p 0 0 1
chr20:10639511|10639680 hsa-miR-20b-3p 0 0 1
chr20:10639511|10639680 hsa-miR-495-5p 0 0 1
chr20:10639511|10639680 hsa-miR-495-3p 0 0 1
chr20:10639511|10639680 hsa-miR-519d-5p 0 0 1
chr20:10639511|10639680 hsa-miR-519d-3p 0 0 1
chr20:10639511|10639680 hsa-miR-634 0 0 1
chr20:10639511|10639680 hsa-miR-890 0 1 1
chr20:10639511|10639680 hsa-miR-922 0 0 1
chr20:10639511|10639680 hsa-miR-1226-5p 0 0 1
chr20:10639511|10639680 hsa-miR-1226-3p 0 0 1
chr20:10639511|10639680 hsa-miR-1253 0 1 1
chr20:10639511|10639680 hsa-miR-3138 0 1 0
chr20:10639511|10639680 hsa-miR-3654 0 1 0
chr20:10639511|10639680 hsa-miR-3943 0 1 0
chr20:10639511|10639680 hsa-miR-4436a 1 1 0
chr20:10639511|10639680 hsa-miR-3978 0 1 0
chr20:10639511|10639680 hsa-miR-5688 0 1 0
chr20:10639511|10639680 hsa-miR-27b-5p 0 1 0
chr20:10639511|10639680 hsa-miR-5000-3p 0 1 0
chr20:10639511|10639680 hsa-miR-3940-3p 0 1 0
chr20:10639511|10639680 hsa-miR-371b-3p 0 1 0
chr20:10639511|10639680 hsa-miR-4520-2-3p 0 1 0
chr20:10639511|10639680 hsa-miR-4520-3p 0 1 0
chr20:10639511|10639680 hsa-miR-4802-3p 0 1 0
chr20:10639511|10639680 hsa-miR-29a-3p 0 1 0
chr20:10639511|10639680 hsa-miR-6831-5p 0 1 0
chr20:10639511|10639680 hsa-miR-9902 0 1 0
chr20:10639511|10639680 hsa-miR-21-3p 0 1 0
chr20:10639511|10639680 hsa-miR-4735-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:10639511|10639680
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MLSCLFVQFGCFVGVPLGGFSSLSTSVYAGCLANRAFCWCLSMS
Nucleotide Sequence CTGTTGTCCTGTTTGTTTGTCCAGTTTGGGTGTTTTGTCGGCGTGCCGTTGGGGGGCTTCTCTTCTCTGTCTACCAGCGTGTACGCCGGCTGCTTGGCAAACCGGGCTTTCTGCTGGTGTTTGTCCATGTCG
CircID chr20:10639511|10639680
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MSSLGVLSACRWGASLLCLPACTPAAWQTGLSAGVCPCR
Nucleotide Sequence TTGTCCAGTTTGGGTGTTTTGTCGGCGTGCCGTTGGGGGGCTTCTCTTCTCTGTCTACCAGCGTGTACGCCGGCTGCTTGGCAAACCGGGCTTTCTGCTGGTGTTTGTCCATGTCGT
CircID chr20:10639511|10639680
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MGTFQVSVVLFVCPVWVFCRRAVGGLLFSVYQRVRRLLGKPGFLLVFVHVV
Nucleotide Sequence CTGGGCACTTTCCAAGTCTCTGTTGTCCTGTTTGTTTGTCCAGTTTGGGTGTTTTGTCGGCGTGCCGTTGGGGGGCTTCTCTTCTCTGTCTACCAGCGTGTACGCCGGCTGCTTGGCAAACCGGGCTTTCTGCTGGTGTTTGTCCATGTCGTC
CircID chr20:10639511|10639680
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MDKHQQKARFAKQPAYTLVDREEKPPNGTPTKHPNWTNKQDNRDLESAQSLNRM
Nucleotide Sequence ATGGACAAACACCAGCAGAAAGCCCGGTTTGCCAAGCAGCCGGCGTACACGCTGGTAGACAGAGAAGAGAAGCCCCCCAACGGCACGCCGACAAAACACCCAAACTGGACAAACAAACAGGACAACAGAGACTTGGAAAGTGCCCAGAGCTTAAACCGAATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab