CircRNA Information

General Information
circRNA Basic Information
CircID chr20:1308909|1309061
Strand +
CircType exon
Host Gene ENSG00000101298.12;
Algorism CIRI2;
Sequence CCCTCCCCAAAGTGCTGTAAGATACCCCTGCGCTTGTGGCAATTGGGAAGGGTGTGTCAGTGAGAAGCTAAGTGATCCCCTTGGGAGAAATCTACAATAAACTCCACTCAAGCCCAGCTCTCTGTGCAGAGCCCGGGCCCCAGCGTCCGATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:1308909|1309061 hsa-miR-150-5p 0 0 1
chr20:1308909|1309061 hsa-miR-150-3p 0 0 1
chr20:1308909|1309061 hsa-miR-600 0 0 1
chr20:1308909|1309061 hsa-miR-760 0 0 1
chr20:1308909|1309061 hsa-miR-939-5p 0 0 1
chr20:1308909|1309061 hsa-miR-939-3p 0 0 1
chr20:1308909|1309061 hsa-miR-1229-5p 0 0 1
chr20:1308909|1309061 hsa-miR-1229-3p 0 0 1
chr20:1308909|1309061 hsa-miR-532-3p 0 0 1
chr20:1308909|1309061 hsa-miR-362-3p 0 0 1
chr20:1308909|1309061 hsa-miR-329 0 0 1
chr20:1308909|1309061 hsa-miR-637 1 0 0
chr20:1308909|1309061 hsa-miR-638 1 0 0
chr20:1308909|1309061 hsa-miR-762 1 0 0
chr20:1308909|1309061 hsa-miR-1538 1 0 0
chr20:1308909|1309061 hsa-miR-3147 1 0 0
chr20:1308909|1309061 hsa-miR-4449 1 0 0
chr20:1308909|1309061 hsa-miR-1587 1 0 0
chr20:1308909|1309061 hsa-miR-4674 1 0 0
chr20:1308909|1309061 hsa-miR-5787 1 0 0
chr20:1308909|1309061 hsa-miR-6132 1 0 0
chr20:1308909|1309061 hsa-miR-12121 1 0 0
chr20:1308909|1309061 hsa-miR-1343-3p 1 0 0
chr20:1308909|1309061 hsa-miR-542-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6749-5p 1 0 0
chr20:1308909|1309061 hsa-miR-4763-3p 1 0 0
chr20:1308909|1309061 hsa-miR-6726-5p 1 0 0
chr20:1308909|1309061 hsa-miR-3620-5p 1 0 0
chr20:1308909|1309061 hsa-miR-1909-3p 1 0 0
chr20:1308909|1309061 hsa-miR-4745-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6848-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6845-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6885-5p 1 0 0
chr20:1308909|1309061 hsa-miR-4758-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6731-5p 1 0 0
chr20:1308909|1309061 hsa-miR-6724-5p 1 0 0
chr20:1308909|1309061 hsa-miR-450b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:1308909|1309061
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MHRELGLSGVYCRFLPRGSLSFSLTHPSQLPQAQGYLTALWGG
Nucleotide Sequence CTGCACAGAGAGCTGGGCTTGAGTGGAGTTTATTGTAGATTTCTCCCAAGGGGATCACTTAGCTTCTCACTGACACACCCTTCCCAATTGCCACAAGCGCAGGGGTATCTTACAGCACTTTGGGGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab