CircRNA Information

General Information
circRNA Basic Information
CircID chr20:20020818|20020936
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTCCTCCTGCAATTCTCTTTCCCTCCTGCATCTGCATCTTCAATTTCTCTTTCCTGGAAGAAATGTACAAATATGATGTGCACTGAGCCATCAGCTCCTCTTGAACAGCTTCCCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:20020818|20020936 hsa-miR-148a-5p 0 0 1
chr20:20020818|20020936 hsa-miR-148a-3p 0 0 1
chr20:20020818|20020936 hsa-miR-152-5p 0 0 1
chr20:20020818|20020936 hsa-miR-152-3p 0 0 1
chr20:20020818|20020936 hsa-miR-148b-5p 0 0 1
chr20:20020818|20020936 hsa-miR-148b-3p 0 0 1
chr20:20020818|20020936 hsa-miR-335-5p 0 0 1
chr20:20020818|20020936 hsa-miR-335-3p 0 0 1
chr20:20020818|20020936 hsa-miR-539-5p 0 0 1
chr20:20020818|20020936 hsa-miR-539-3p 0 0 1
chr20:20020818|20020936 hsa-miR-765 0 0 1
chr20:20020818|20020936 hsa-miR-708-5p 0 0 1
chr20:20020818|20020936 hsa-miR-708-3p 0 0 1
chr20:20020818|20020936 hsa-miR-665 0 0 1
chr20:20020818|20020936 hsa-miR-1286 0 0 1
chr20:20020818|20020936 hsa-miR-1279 0 0 1
chr20:20020818|20020936 hsa-miR-28-5p 0 0 1
chr20:20020818|20020936 hsa-miR-24 0 0 1
chr20:20020818|20020936 hsa-miR-184 1 0 0
chr20:20020818|20020936 hsa-miR-567 0 1 0
chr20:20020818|20020936 hsa-miR-298 1 0 0
chr20:20020818|20020936 hsa-miR-920 1 0 0
chr20:20020818|20020936 hsa-miR-3132 1 0 0
chr20:20020818|20020936 hsa-miR-3153 1 1 0
chr20:20020818|20020936 hsa-miR-4271 1 0 0
chr20:20020818|20020936 hsa-miR-3665 1 0 0
chr20:20020818|20020936 hsa-miR-4476 1 0 0
chr20:20020818|20020936 hsa-miR-4510 1 0 0
chr20:20020818|20020936 hsa-miR-4533 1 1 0
chr20:20020818|20020936 hsa-miR-4534 1 0 0
chr20:20020818|20020936 hsa-miR-4644 1 1 0
chr20:20020818|20020936 hsa-miR-4739 1 0 0
chr20:20020818|20020936 hsa-miR-4779 1 1 0
chr20:20020818|20020936 hsa-miR-5192 1 0 0
chr20:20020818|20020936 hsa-miR-5739 1 0 0
chr20:20020818|20020936 hsa-miR-6088 1 0 0
chr20:20020818|20020936 hsa-miR-6090 1 0 0
chr20:20020818|20020936 hsa-miR-6124 1 0 0
chr20:20020818|20020936 hsa-miR-6127 1 0 0
chr20:20020818|20020936 hsa-miR-6130 1 0 0
chr20:20020818|20020936 hsa-miR-6133 1 0 0
chr20:20020818|20020936 hsa-miR-6165 1 0 0
chr20:20020818|20020936 hsa-miR-8075 0 1 0
chr20:20020818|20020936 hsa-miR-8085 1 1 0
chr20:20020818|20020936 hsa-miR-12114 1 0 0
chr20:20020818|20020936 hsa-miR-12124 1 0 0
chr20:20020818|20020936 hsa-miR-92a-2-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6734-5p 1 0 0
chr20:20020818|20020936 hsa-miR-671-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6825-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6894-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4687-3p 1 0 0
chr20:20020818|20020936 hsa-miR-6510-5p 1 0 0
chr20:20020818|20020936 hsa-miR-139-3p 1 0 0
chr20:20020818|20020936 hsa-miR-5187-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4768-3p 1 0 0
chr20:20020818|20020936 hsa-miR-3192-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6757-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6873-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6880-5p 1 0 0
chr20:20020818|20020936 hsa-miR-7847-3p 1 0 0
chr20:20020818|20020936 hsa-miR-4695-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4722-5p 1 1 0
chr20:20020818|20020936 hsa-miR-1301-3p 1 0 0
chr20:20020818|20020936 hsa-miR-24-3p 0 1 0
chr20:20020818|20020936 hsa-miR-197-5p 1 0 0
chr20:20020818|20020936 hsa-miR-7845-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6798-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6760-5p 1 1 0
chr20:20020818|20020936 hsa-miR-6881-5p 1 0 0
chr20:20020818|20020936 hsa-miR-2467-3p 1 0 0
chr20:20020818|20020936 hsa-miR-6888-5p 1 0 0
chr20:20020818|20020936 hsa-miR-7109-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6771-5p 1 0 0
chr20:20020818|20020936 hsa-miR-149-3p 1 0 0
chr20:20020818|20020936 hsa-miR-423-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4727-3p 0 1 0
chr20:20020818|20020936 hsa-miR-1207-5p 1 0 0
chr20:20020818|20020936 hsa-miR-1233-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4763-3p 1 0 0
chr20:20020818|20020936 hsa-miR-6778-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6893-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6726-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6743-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6754-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6769a-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6813-5p 0 1 0
chr20:20020818|20020936 hsa-miR-1249-5p 1 1 0
chr20:20020818|20020936 hsa-miR-6722-3p 1 0 0
chr20:20020818|20020936 hsa-miR-6763-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6779-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6797-5p 1 1 0
chr20:20020818|20020936 hsa-miR-6875-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6879-5p 1 0 0
chr20:20020818|20020936 hsa-miR-7111-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4728-5p 1 0 0
chr20:20020818|20020936 hsa-miR-5196-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6780b-5p 1 0 0
chr20:20020818|20020936 hsa-miR-328-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6738-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6795-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6858-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6883-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6887-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4723-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6831-5p 1 0 0
chr20:20020818|20020936 hsa-miR-939-5p 1 1 0
chr20:20020818|20020936 hsa-miR-6731-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6739-5p 1 1 0
chr20:20020818|20020936 hsa-miR-6856-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4646-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4747-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6876-5p 1 0 0
chr20:20020818|20020936 hsa-miR-6891-5p 1 0 0
chr20:20020818|20020936 hsa-miR-4716-3p 1 0 0
chr20:20020818|20020936 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:20020818|20020936
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MQFSFPPASASSISLSWKKCTNMMCTEPSAPLEQLPT
Nucleotide Sequence CTGCAATTCTCTTTCCCTCCTGCATCTGCATCTTCAATTTCTCTTTCCTGGAAGAAATGTACAAATATGATGTGCACTGAGCCATCAGCTCCTCTTGAACAGCTTCCCACT
CircID chr20:20020818|20020936
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MMAQCTSYLYISSRKEKLKMQMQEGKRIAGG
Nucleotide Sequence CTGATGGCTCAGTGCACATCATATTTGTACATTTCTTCCAGGAAAGAGAAATTGAAGATGCAGATGCAGGAGGGAAAGAGAATTGCAGGAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab