CircRNA Information

General Information
circRNA Basic Information
CircID chr20:23633759|23633883
Strand +
CircType exon
Host Gene ENSG00000101439.7;
Algorism CIRI2;
Sequence CTCTTATGCACACCTCCCACCCCCTGTATTCCCACCCCTGGACTGGTGGCCCCTGCCTTGGGGAAGGTCTCCCCATGTGCCTGCACCAGGAGACAGACAGAGAAGGCAGCAGGCGGCCTTTGTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:23633759|23633883 hsa-miR-370-5p 0 0 1
chr20:23633759|23633883 hsa-miR-370-3p 0 0 1
chr20:23633759|23633883 hsa-miR-608 1 1 1
chr20:23633759|23633883 hsa-miR-939-5p 0 0 1
chr20:23633759|23633883 hsa-miR-939-3p 0 0 1
chr20:23633759|23633883 hsa-miR-940 1 1 1
chr20:23633759|23633883 hsa-miR-942-5p 0 0 1
chr20:23633759|23633883 hsa-miR-942-3p 0 0 1
chr20:23633759|23633883 hsa-miR-769-5p 0 0 1
chr20:23633759|23633883 hsa-miR-1207-5p 1 0 1
chr20:23633759|23633883 hsa-miR-455-3p 0 1 1
chr20:23633759|23633883 hsa-miR-198 1 0 0
chr20:23633759|23633883 hsa-miR-663a 1 0 0
chr20:23633759|23633883 hsa-miR-762 1 0 0
chr20:23633759|23633883 hsa-miR-1268a 1 0 0
chr20:23633759|23633883 hsa-miR-548q 0 1 0
chr20:23633759|23633883 hsa-miR-4269 0 1 0
chr20:23633759|23633883 hsa-miR-4270 1 0 0
chr20:23633759|23633883 hsa-miR-4281 1 0 0
chr20:23633759|23633883 hsa-miR-1268b 1 0 0
chr20:23633759|23633883 hsa-miR-4466 1 0 0
chr20:23633759|23633883 hsa-miR-3689c 0 1 0
chr20:23633759|23633883 hsa-miR-4488 1 0 0
chr20:23633759|23633883 hsa-miR-4648 1 0 0
chr20:23633759|23633883 hsa-miR-4651 1 1 0
chr20:23633759|23633883 hsa-miR-4689 1 0 0
chr20:23633759|23633883 hsa-miR-5572 1 0 0
chr20:23633759|23633883 hsa-miR-5698 1 0 0
chr20:23633759|23633883 hsa-miR-5787 1 0 0
chr20:23633759|23633883 hsa-miR-6085 1 0 0
chr20:23633759|23633883 hsa-miR-6127 1 0 0
chr20:23633759|23633883 hsa-miR-12128 1 0 0
chr20:23633759|23633883 hsa-miR-150-3p 1 0 0
chr20:23633759|23633883 hsa-miR-4433b-3p 1 0 0
chr20:23633759|23633883 hsa-miR-6747-5p 1 0 0
chr20:23633759|23633883 hsa-miR-4433a-3p 1 0 0
chr20:23633759|23633883 hsa-miR-3150a-3p 1 1 0
chr20:23633759|23633883 hsa-miR-6799-5p 0 1 0
chr20:23633759|23633883 hsa-miR-6510-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6089 1 0 0
chr20:23633759|23633883 hsa-miR-6757-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6806-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6721-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6742-5p 1 0 0
chr20:23633759|23633883 hsa-miR-491-5p 0 1 0
chr20:23633759|23633883 hsa-miR-6716-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6871-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6748-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6732-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6805-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6798-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6782-5p 1 1 0
chr20:23633759|23633883 hsa-miR-30b-3p 0 1 0
chr20:23633759|23633883 hsa-miR-6882-3p 1 1 0
chr20:23633759|23633883 hsa-miR-4640-5p 1 0 0
chr20:23633759|23633883 hsa-miR-296-3p 1 0 0
chr20:23633759|23633883 hsa-miR-6823-5p 1 0 0
chr20:23633759|23633883 hsa-miR-4713-3p 1 0 0
chr20:23633759|23633883 hsa-miR-659-5p 0 1 0
chr20:23633759|23633883 hsa-miR-4743-3p 0 1 0
chr20:23633759|23633883 hsa-miR-4787-5p 1 0 0
chr20:23633759|23633883 hsa-miR-149-3p 1 0 0
chr20:23633759|23633883 hsa-miR-6824-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6789-5p 1 0 0
chr20:23633759|23633883 hsa-miR-3162-5p 1 0 0
chr20:23633759|23633883 hsa-miR-3120-5p 0 1 0
chr20:23633759|23633883 hsa-miR-3065-5p 0 1 0
chr20:23633759|23633883 hsa-miR-6768-3p 0 1 0
chr20:23633759|23633883 hsa-miR-5589-3p 0 1 0
chr20:23633759|23633883 hsa-miR-1233-5p 1 1 0
chr20:23633759|23633883 hsa-miR-3689b-3p 0 1 0
chr20:23633759|23633883 hsa-miR-4763-3p 1 1 0
chr20:23633759|23633883 hsa-miR-6769b-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6778-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6787-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6816-5p 1 0 0
chr20:23633759|23633883 hsa-miR-1343-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6737-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6752-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6756-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6803-5p 1 1 0
chr20:23633759|23633883 hsa-miR-6813-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6819-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6842-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6851-5p 1 1 0
chr20:23633759|23633883 hsa-miR-7110-5p 1 1 0
chr20:23633759|23633883 hsa-miR-10401-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6722-3p 1 1 0
chr20:23633759|23633883 hsa-miR-6751-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6808-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6879-5p 1 0 0
chr20:23633759|23633883 hsa-miR-7111-5p 1 0 0
chr20:23633759|23633883 hsa-miR-320a-5p 0 1 0
chr20:23633759|23633883 hsa-miR-10526-3p 1 0 0
chr20:23633759|23633883 hsa-miR-1237-5p 1 0 0
chr20:23633759|23633883 hsa-miR-1909-3p 1 1 0
chr20:23633759|23633883 hsa-miR-3689a-3p 0 1 0
chr20:23633759|23633883 hsa-miR-4685-5p 1 0 0
chr20:23633759|23633883 hsa-miR-675-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6794-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6846-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6848-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6511b-5p 0 1 0
chr20:23633759|23633883 hsa-miR-4716-3p 1 0 0
chr20:23633759|23633883 hsa-miR-6766-5p 1 1 0
chr20:23633759|23633883 hsa-miR-1185-1-3p 1 0 0
chr20:23633759|23633883 hsa-miR-1185-2-3p 1 0 0
chr20:23633759|23633883 hsa-miR-3689d 0 1 0
chr20:23633759|23633883 hsa-miR-6753-3p 1 0 0
chr20:23633759|23633883 hsa-miR-6893-3p 0 1 0
chr20:23633759|23633883 hsa-miR-6837-5p 1 0 0
chr20:23633759|23633883 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:23633759|23633883
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MVAPALGKVSPCACTRRQTEKAAGGLC
Nucleotide Sequence CTGGTGGCCCCTGCCTTGGGGAAGGTCTCCCCATGTGCCTGCACCAGGAGACAGACAGAGAAGGCAGCAGGCGGCCTTTGT
CircID chr20:23633759|23633883
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MDWWPLPWGRSPHVPAPGDRQRRQQAAFV
Nucleotide Sequence CTGGACTGGTGGCCCCTGCCTTGGGGAAGGTCTCCCCATGTGCCTGCACCAGGAGACAGACAGAGAAGGCAGCAGGCGGCCTTTGTT
CircID chr20:23633759|23633883
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MHTSHPLYSHPWTGGPCLGEGLPMCLHQETDREGSRRPLL
Nucleotide Sequence ATGCACACCTCCCACCCCCTGTATTCCCACCCCTGGACTGGTGGCCCCTGCCTTGGGGAAGGTCTCCCCATGTGCCTGCACCAGGAGACAGACAGAGAAGGCAGCAGGCGGCCTTTGTTG
CircID chr20:23633759|23633883
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MVQAHGETFPKAGATSPGVGIQGVGGVHK
Nucleotide Sequence CTGGTGCAGGCACATGGGGAGACCTTCCCCAAGGCAGGGGCCACCAGTCCAGGGGTGGGAATACAGGGGGTGGGAGGTGTGCATAAG
CircID chr20:23633759|23633883
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MLPSLSVSWCRHMGRPSPRQGPPVQGWEYRGWEVCIR
Nucleotide Sequence CTGCTGCCTTCTCTGTCTGTCTCCTGGTGCAGGCACATGGGGAGACCTTCCCCAAGGCAGGGGCCACCAGTCCAGGGGTGGGAATACAGGGGGTGGGAGGTGTGCATAAGA
CircID chr20:23633759|23633883
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MSPGAGTWGDLPQGRGHQSRGGNTGGGRCA
Nucleotide Sequence CTGTCTCCTGGTGCAGGCACATGGGGAGACCTTCCCCAAGGCAGGGGCCACCAGTCCAGGGGTGGGAATACAGGGGGTGGGAGGTGTGCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab