CircRNA Information

General Information
circRNA Basic Information
CircID chr20:24963331|24963588
Strand -
CircType exon
Host Gene ENSG00000101474.10;
Algorism CIRI2;
Sequence ACCCCTGGGCCATGCTCCCTCTGCTCTTCCATCCCCACCACAACGAAGAAAGGTATGACCGCACGTTATATATAGTAAAGAAGAACTTTGAGGCCGCAGGACAGGGCCGCAGCAGCAAGCTCTCTGGGTAGTGCCTTACTGCTCCACCCACCTGAGCCCTGTTCCAAGTGCAAGGAGCTTCCCAAATCCTAGAGAATGACTGTACTTAGAAAGTTTTGTTTTGTTTAAGAGAAAATGGCTTTACATGAATTTATGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:24963331|24963588 hsa-miR-410-5p 0 0 1
chr20:24963331|24963588 hsa-miR-410-3p 0 0 1
chr20:24963331|24963588 hsa-miR-520g-5p 0 0 1
chr20:24963331|24963588 hsa-miR-520g-3p 0 0 1
chr20:24963331|24963588 hsa-miR-520h 0 0 1
chr20:24963331|24963588 hsa-miR-506-5p 0 0 1
chr20:24963331|24963588 hsa-miR-506-3p 0 0 1
chr20:24963331|24963588 hsa-miR-1323 0 0 1
chr20:24963331|24963588 hsa-miR-890 0 1 1
chr20:24963331|24963588 hsa-miR-541-5p 0 0 1
chr20:24963331|24963588 hsa-miR-541-3p 0 0 1
chr20:24963331|24963588 hsa-miR-1291 0 0 1
chr20:24963331|24963588 hsa-miR-1293 0 0 1
chr20:24963331|24963588 hsa-miR-1251-5p 0 0 1
chr20:24963331|24963588 hsa-miR-1251-3p 0 0 1
chr20:24963331|24963588 hsa-miR-548o-3p 0 0 1
chr20:24963331|24963588 hsa-miR-548o 0 0 1
chr20:24963331|24963588 hsa-miR-125a-3p 0 0 1
chr20:24963331|24963588 hsa-miR-491-5p 0 0 1
chr20:24963331|24963588 hsa-miR-146b-3p 0 0 1
chr20:24963331|24963588 hsa-miR-339-5p 0 1 1
chr20:24963331|24963588 hsa-miR-654-5p 0 0 1
chr20:24963331|24963588 hsa-miR-502-5p 0 0 1
chr20:24963331|24963588 hsa-miR-576-5p 0 0 1
chr20:24963331|24963588 hsa-miR-7 0 0 1
chr20:24963331|24963588 hsa-miR-124 0 0 1
chr20:24963331|24963588 hsa-miR-24 0 0 1
chr20:24963331|24963588 hsa-miR-608 1 0 0
chr20:24963331|24963588 hsa-miR-658 1 0 0
chr20:24963331|24963588 hsa-miR-762 1 0 0
chr20:24963331|24963588 hsa-miR-2278 0 1 0
chr20:24963331|24963588 hsa-miR-4298 1 0 0
chr20:24963331|24963588 hsa-miR-4253 0 1 0
chr20:24963331|24963588 hsa-miR-4325 0 1 0
chr20:24963331|24963588 hsa-miR-4437 0 1 0
chr20:24963331|24963588 hsa-miR-4448 0 1 0
chr20:24963331|24963588 hsa-miR-4450 1 0 0
chr20:24963331|24963588 hsa-miR-4468 0 1 0
chr20:24963331|24963588 hsa-miR-4510 0 1 0
chr20:24963331|24963588 hsa-miR-4651 1 0 0
chr20:24963331|24963588 hsa-miR-4656 1 0 0
chr20:24963331|24963588 hsa-miR-4688 1 0 0
chr20:24963331|24963588 hsa-miR-4721 1 0 0
chr20:24963331|24963588 hsa-miR-4734 1 0 0
chr20:24963331|24963588 hsa-miR-4739 1 0 0
chr20:24963331|24963588 hsa-miR-6077 0 1 0
chr20:24963331|24963588 hsa-miR-6081 1 1 0
chr20:24963331|24963588 hsa-miR-6745 0 1 0
chr20:24963331|24963588 hsa-miR-8089 1 0 0
chr20:24963331|24963588 hsa-miR-12115 1 1 0
chr20:24963331|24963588 hsa-miR-92a-2-5p 0 1 0
chr20:24963331|24963588 hsa-miR-6728-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6757-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6880-5p 0 1 0
chr20:24963331|24963588 hsa-miR-6759-5p 1 0 0
chr20:24963331|24963588 hsa-miR-432-5p 1 1 0
chr20:24963331|24963588 hsa-miR-7845-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6742-5p 1 0 0
chr20:24963331|24963588 hsa-miR-3605-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6748-5p 0 1 0
chr20:24963331|24963588 hsa-miR-6796-5p 0 1 0
chr20:24963331|24963588 hsa-miR-6732-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6798-5p 1 0 0
chr20:24963331|24963588 hsa-miR-2467-3p 1 1 0
chr20:24963331|24963588 hsa-miR-6782-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6810-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6786-5p 1 1 0
chr20:24963331|24963588 hsa-miR-5088-5p 1 1 0
chr20:24963331|24963588 hsa-miR-4640-5p 1 0 0
chr20:24963331|24963588 hsa-miR-3614-5p 0 1 0
chr20:24963331|24963588 hsa-miR-4787-5p 1 0 0
chr20:24963331|24963588 hsa-miR-450a-2-3p 0 1 0
chr20:24963331|24963588 hsa-miR-5010-5p 1 1 0
chr20:24963331|24963588 hsa-miR-1250-5p 1 0 0
chr20:24963331|24963588 hsa-miR-5003-3p 1 1 0
chr20:24963331|24963588 hsa-miR-1910-5p 1 0 0
chr20:24963331|24963588 hsa-miR-4746-3p 1 0 0
chr20:24963331|24963588 hsa-miR-6748-3p 0 1 0
chr20:24963331|24963588 hsa-miR-1233-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6769b-5p 1 1 0
chr20:24963331|24963588 hsa-miR-1343-5p 1 1 0
chr20:24963331|24963588 hsa-miR-5001-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6737-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6752-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6756-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6769a-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6803-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6819-5p 1 0 0
chr20:24963331|24963588 hsa-miR-7110-5p 1 0 0
chr20:24963331|24963588 hsa-miR-1249-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6722-3p 1 0 0
chr20:24963331|24963588 hsa-miR-6763-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6797-5p 1 0 0
chr20:24963331|24963588 hsa-miR-7111-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6780b-5p 1 0 0
chr20:24963331|24963588 hsa-miR-4632-5p 0 1 0
chr20:24963331|24963588 hsa-miR-4685-5p 1 0 0
chr20:24963331|24963588 hsa-miR-6735-5p 0 1 0
chr20:24963331|24963588 hsa-miR-6794-5p 1 0 0
chr20:24963331|24963588 hsa-miR-939-5p 1 1 0
chr20:24963331|24963588 hsa-miR-6731-5p 0 1 0
chr20:24963331|24963588 hsa-miR-10398-3p 0 1 0
chr20:24963331|24963588 hsa-miR-6775-3p 1 1 0
chr20:24963331|24963588 hsa-miR-3059-3p 0 1 0
chr20:24963331|24963588 hsa-miR-450a-1-3p 0 1 0
chr20:24963331|24963588 hsa-miR-525-3p 1 0 0
chr20:24963331|24963588 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:24963331|24963588
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MRPQDRAAAASSLGSALLLHPPEPCSKCKELPKS
Nucleotide Sequence TTGAGGCCGCAGGACAGGGCCGCAGCAGCAAGCTCTCTGGGTAGTGCCTTACTGCTCCACCCACCTGAGCCCTGTTCCAAGTGCAAGGAGCTTCCCAAATCCTAG
CircID chr20:24963331|24963588
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MLPLLFHPHHNEERYDRTLYIVKKNFEAAGQGRSSKLSG
Nucleotide Sequence ATGCTCCCTCTGCTCTTCCATCCCCACCACAACGAAGAAAGGTATGACCGCACGTTATATATAGTAAAGAAGAACTTTGAGGCCGCAGGACAGGGCCGCAGCAGCAAGCTCTCTGGGTAG
CircID chr20:24963331|24963588
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MRPQSSSLLYITCGHTFLRCGGDGRAEGAWPRG
Nucleotide Sequence CTGCGGCCTCAAAGTTCTTCTTTACTATATATAACGTGCGGTCATACCTTTCTTCGTTGTGGTGGGGATGGAAGAGCAGAGGGAGCATGGCCCAGGGGT
CircID chr20:24963331|24963588
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MGSSLHLEQGSGGWSSKALPRELAAAALSCGLKVLLYYI
Nucleotide Sequence TTGGGAAGCTCCTTGCACTTGGAACAGGGCTCAGGTGGGTGGAGCAGTAAGGCACTACCCAGAGAGCTTGCTGCTGCGGCCCTGTCCTGCGGCCTCAAAGTTCTTCTTTACTATATATAA
CircID chr20:24963331|24963588
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MLLRPCPAASKFFFTIYNVRSYLSSLWWGWKSRGSMAQG
Nucleotide Sequence TTGCTGCTGCGGCCCTGTCCTGCGGCCTCAAAGTTCTTCTTTACTATATATAACGTGCGGTCATACCTTTCTTCGTTGTGGTGGGGATGGAAGAGCAGAGGGAGCATGGCCCAGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab