CircRNA Information

General Information
circRNA Basic Information
CircID chr20:25300635|25300884
Strand -
CircType exon
Host Gene ENSG00000100997.17;
Algorism CIRI2;
Sequence CCACGCTTTCCACACAGCCATGCTCAGGCCTCCGGGCACTGCAGGCCTGCAGGGGCCTCCCCGCCTGGGATCTGAGGTGCTCTCCAGGTGCGAGCTGGGCTCCTGAGCATTGCAGGTGCCGGCCCCCCGGGGCTTCAGGATACCGGGCTGCTGACTGGAGGAAAACGGGAGGAGGGCAGAGGTCTTCATGCTTCCTTCCCACGGCCAGGCTCAGTGCTGGTGCTCAGGCTCCGACTTCCCCAGGAATTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:25300635|25300884 hsa-miR-29a-5p 0 0 1
chr20:25300635|25300884 hsa-miR-29a-3p 0 0 1
chr20:25300635|25300884 hsa-miR-214-5p 0 0 1
chr20:25300635|25300884 hsa-miR-214-3p 0 0 1
chr20:25300635|25300884 hsa-miR-185-5p 0 0 1
chr20:25300635|25300884 hsa-miR-185-3p 0 0 1
chr20:25300635|25300884 hsa-miR-29c-5p 0 0 1
chr20:25300635|25300884 hsa-miR-29c-3p 0 0 1
chr20:25300635|25300884 hsa-miR-619-5p 0 0 1
chr20:25300635|25300884 hsa-miR-619-3p 0 0 1
chr20:25300635|25300884 hsa-miR-634 0 0 1
chr20:25300635|25300884 hsa-miR-922 0 0 1
chr20:25300635|25300884 hsa-miR-1226-5p 0 0 1
chr20:25300635|25300884 hsa-miR-1226-3p 0 0 1
chr20:25300635|25300884 hsa-miR-1238-5p 0 0 1
chr20:25300635|25300884 hsa-miR-1238-3p 0 0 1
chr20:25300635|25300884 hsa-miR-1205 0 0 1
chr20:25300635|25300884 hsa-miR-1252-5p 0 0 1
chr20:25300635|25300884 hsa-miR-1252-3p 0 0 1
chr20:25300635|25300884 hsa-miR-324-3p 0 0 1
chr20:25300635|25300884 hsa-miR-644 0 0 1
chr20:25300635|25300884 hsa-miR-147 0 0 1
chr20:25300635|25300884 hsa-miR-663 0 0 1
chr20:25300635|25300884 hsa-miR-29b 0 0 1
chr20:25300635|25300884 hsa-miR-612 1 0 0
chr20:25300635|25300884 hsa-miR-661 1 0 0
chr20:25300635|25300884 hsa-miR-665 1 0 0
chr20:25300635|25300884 hsa-miR-1200 1 0 0
chr20:25300635|25300884 hsa-miR-2861 1 0 0
chr20:25300635|25300884 hsa-miR-4682 1 0 0
chr20:25300635|25300884 hsa-miR-4706 1 0 0
chr20:25300635|25300884 hsa-miR-5192 1 0 0
chr20:25300635|25300884 hsa-miR-5100 1 0 0
chr20:25300635|25300884 hsa-miR-6078 1 0 0
chr20:25300635|25300884 hsa-miR-6084 1 0 0
chr20:25300635|25300884 hsa-miR-6132 1 0 0
chr20:25300635|25300884 hsa-miR-6860 1 0 0
chr20:25300635|25300884 hsa-miR-8089 1 0 0
chr20:25300635|25300884 hsa-miR-671-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6825-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6799-5p 1 0 0
chr20:25300635|25300884 hsa-miR-3663-3p 1 0 0
chr20:25300635|25300884 hsa-miR-6089 1 0 0
chr20:25300635|25300884 hsa-miR-6727-5p 1 0 0
chr20:25300635|25300884 hsa-miR-5008-5p 1 0 0
chr20:25300635|25300884 hsa-miR-1343-3p 1 0 0
chr20:25300635|25300884 hsa-miR-4783-3p 1 0 0
chr20:25300635|25300884 hsa-miR-6749-5p 1 0 0
chr20:25300635|25300884 hsa-miR-4638-3p 1 0 0
chr20:25300635|25300884 hsa-miR-6816-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6775-5p 1 0 0
chr20:25300635|25300884 hsa-miR-1343-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6752-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6803-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6780b-5p 1 0 0
chr20:25300635|25300884 hsa-miR-328-5p 1 0 0
chr20:25300635|25300884 hsa-miR-4726-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6848-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6885-5p 1 0 0
chr20:25300635|25300884 hsa-miR-939-5p 1 0 0
chr20:25300635|25300884 hsa-miR-4665-5p 1 0 0
chr20:25300635|25300884 hsa-miR-6791-5p 1 0 0
chr20:25300635|25300884 hsa-miR-9851-3p 1 0 0
chr20:25300635|25300884 hsa-miR-4691-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:25300635|25300884
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MSIAGAGPPGLQDTGLLTGGKREEGRGLHASFPRPGSVLVLRLRLPQEF
Nucleotide Sequence CTGAGCATTGCAGGTGCCGGCCCCCCGGGGCTTCAGGATACCGGGCTGCTGACTGGAGGAAAACGGGAGGAGGGCAGAGGTCTTCATGCTTCCTTCCCACGGCCAGGCTCAGTGCTGGTGCTCAGGCTCCGACTTCCCCAGGAATTC
CircID chr20:25300635|25300884
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MLRPPGTAGLQGPPRLGSEVLSRCELGS
Nucleotide Sequence ATGCTCAGGCCTCCGGGCACTGCAGGCCTGCAGGGGCCTCCCCGCCTGGGATCTGAGGTGCTCTCCAGGTGCGAGCTGGGCTCCTGA
CircID chr20:25300635|25300884
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MEENGRRAEVFMLPSHGQAQCWCSGSDFPRNS
Nucleotide Sequence CTGGAGGAAAACGGGAGGAGGGCAGAGGTCTTCATGCTTCCTTCCCACGGCCAGGCTCAGTGCTGGTGCTCAGGCTCCGACTTCCCCAGGAATTCC
CircID chr20:25300635|25300884
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MQACRGLPAWDLRCSPGASWAPEHCRCRPPGASGYRAADWRKTGGGQRSSCFLPTARLSAGAQAPTSPGI
Nucleotide Sequence CTGCAGGCCTGCAGGGGCCTCCCCGCCTGGGATCTGAGGTGCTCTCCAGGTGCGAGCTGGGCTCCTGAGCATTGCAGGTGCCGGCCCCCCGGGGCTTCAGGATACCGGGCTGCTGACTGGAGGAAAACGGGAGGAGGGCAGAGGTCTTCATGCTTCCTTCCCACGGCCAGGCTCAGTGCTGGTGCTCAGGCTCCGACTTCCCCAGGAATT
CircID chr20:25300635|25300884
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MSLAVGRKHEDLCPPPVFLQSAARYPEAPGGRHLQCSGAQLAPGEHLRSQAGRPLQACSARRPEHGCVESV
Nucleotide Sequence CTGAGCCTGGCCGTGGGAAGGAAGCATGAAGACCTCTGCCCTCCTCCCGTTTTCCTCCAGTCAGCAGCCCGGTATCCTGAAGCCCCGGGGGGCCGGCACCTGCAATGCTCAGGAGCCCAGCTCGCACCTGGAGAGCACCTCAGATCCCAGGCGGGGAGGCCCCTGCAGGCCTGCAGTGCCCGGAGGCCTGAGCATGGCTGTGTGGAAAGCGTG
CircID chr20:25300635|25300884
ORF Type ORF6
Protein Length 63
Nucleotide Length 189
Protein Sequence MKTSALLPFSSSQQPGILKPRGAGTCNAQEPSSHLESTSDPRRGGPCRPAVPGGLSMAVWKAW
Nucleotide Sequence ATGAAGACCTCTGCCCTCCTCCCGTTTTCCTCCAGTCAGCAGCCCGGTATCCTGAAGCCCCGGGGGGCCGGCACCTGCAATGCTCAGGAGCCCAGCTCGCACCTGGAGAGCACCTCAGATCCCAGGCGGGGAGGCCCCTGCAGGCCTGCAGTGCCCGGAGGCCTGAGCATGGCTGTGTGGAAAGCGTGG
CircID chr20:25300635|25300884
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MLRSPARTWRAPQIPGGEAPAGLQCPEA
Nucleotide Sequence ATGCTCAGGAGCCCAGCTCGCACCTGGAGAGCACCTCAGATCCCAGGCGGGGAGGCCCCTGCAGGCCTGCAGTGCCCGGAGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab