CircRNA Information

General Information
circRNA Basic Information
CircID chr20:2655675|2656034
Strand +
CircType exon
Host Gene ENSG00000101361.13;
Algorism CIRI2;
Sequence CTGAACAGGGCCTTTTCAGCCCCAAGGATCTGCACTGTGGATGCTGGATACTTGGCCAGGTTGGTGAGGCTGCCAGCATGTGCGATGAGACGTGCACCTACCTGGAGAGAGAGTCAAGGAAGCAGTCAGAGAAATGAACTGCTGACCTGCCCAGTTGCACGACAGCCCTGCTCCCCACCTCCCCATCAAGCACAACTAGGGAAGACATGGTGGGTCACGAAATACAGCAGTGCAGGTGCACATGGCAACAGTCCTTATTCTCCCATTTTTGAGTCCCCTGTGACGCACCGCTTCCCCAATTAGGGCTGACAGGCTGGGGGCTACTTGGCTCATCTTGGAGCGCAGGTAAGTGTGTAGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:2655675|2656034 hsa-miR-148a-5p 0 0 1
chr20:2655675|2656034 hsa-miR-148a-3p 0 0 1
chr20:2655675|2656034 hsa-miR-214-5p 0 0 1
chr20:2655675|2656034 hsa-miR-214-3p 0 0 1
chr20:2655675|2656034 hsa-miR-152-5p 0 0 1
chr20:2655675|2656034 hsa-miR-152-3p 0 0 1
chr20:2655675|2656034 hsa-miR-148b-5p 0 0 1
chr20:2655675|2656034 hsa-miR-148b-3p 0 0 1
chr20:2655675|2656034 hsa-miR-345-5p 0 0 1
chr20:2655675|2656034 hsa-miR-345-3p 0 0 1
chr20:2655675|2656034 hsa-miR-517-5p 0 0 1
chr20:2655675|2656034 hsa-miR-517a-3p 0 0 1
chr20:2655675|2656034 hsa-miR-517b-3p 0 0 1
chr20:2655675|2656034 hsa-miR-517c-3p 0 0 1
chr20:2655675|2656034 hsa-miR-562 0 0 1
chr20:2655675|2656034 hsa-miR-579-5p 0 0 1
chr20:2655675|2656034 hsa-miR-579-3p 0 0 1
chr20:2655675|2656034 hsa-miR-603 0 0 1
chr20:2655675|2656034 hsa-miR-612 1 1 1
chr20:2655675|2656034 hsa-miR-636 0 0 1
chr20:2655675|2656034 hsa-miR-766-5p 0 0 1
chr20:2655675|2656034 hsa-miR-766-3p 0 0 1
chr20:2655675|2656034 hsa-miR-891b 0 0 1
chr20:2655675|2656034 hsa-miR-888-5p 0 0 1
chr20:2655675|2656034 hsa-miR-888-3p 0 0 1
chr20:2655675|2656034 hsa-miR-922 0 0 1
chr20:2655675|2656034 hsa-miR-939-5p 0 0 1
chr20:2655675|2656034 hsa-miR-939-3p 0 0 1
chr20:2655675|2656034 hsa-miR-1291 0 0 1
chr20:2655675|2656034 hsa-miR-491-5p 0 0 1
chr20:2655675|2656034 hsa-miR-885-3p 0 0 1
chr20:2655675|2656034 hsa-miR-146b-3p 0 0 1
chr20:2655675|2656034 hsa-miR-490-3p 0 1 1
chr20:2655675|2656034 hsa-miR-361-3p 0 1 1
chr20:2655675|2656034 hsa-miR-502-5p 0 0 1
chr20:2655675|2656034 hsa-miR-513a-5p 0 0 1
chr20:2655675|2656034 hsa-miR-338-3p 0 0 1
chr20:2655675|2656034 hsa-miR-362-5p 0 0 1
chr20:2655675|2656034 hsa-miR-516a-3p 0 0 1
chr20:2655675|2656034 hsa-miR-362-3p 0 0 1
chr20:2655675|2656034 hsa-miR-128 0 0 1
chr20:2655675|2656034 hsa-miR-1274b 0 0 1
chr20:2655675|2656034 hsa-miR-220c 0 0 1
chr20:2655675|2656034 hsa-miR-1285 0 0 1
chr20:2655675|2656034 hsa-miR-218 0 0 1
chr20:2655675|2656034 hsa-miR-329 0 0 1
chr20:2655675|2656034 hsa-miR-608 1 0 0
chr20:2655675|2656034 hsa-miR-637 1 0 0
chr20:2655675|2656034 hsa-miR-762 1 0 0
chr20:2655675|2656034 hsa-miR-943 0 1 0
chr20:2655675|2656034 hsa-miR-1539 0 1 0
chr20:2655675|2656034 hsa-miR-2110 0 1 0
chr20:2655675|2656034 hsa-miR-3169 0 1 0
chr20:2655675|2656034 hsa-miR-3937 1 0 0
chr20:2655675|2656034 hsa-miR-3943 0 1 0
chr20:2655675|2656034 hsa-miR-4450 1 0 0
chr20:2655675|2656034 hsa-miR-4648 1 0 0
chr20:2655675|2656034 hsa-miR-4651 1 0 0
chr20:2655675|2656034 hsa-miR-4656 1 0 0
chr20:2655675|2656034 hsa-miR-4706 1 0 0
chr20:2655675|2656034 hsa-miR-4739 1 0 0
chr20:2655675|2656034 hsa-miR-4741 1 1 0
chr20:2655675|2656034 hsa-miR-5695 0 1 0
chr20:2655675|2656034 hsa-miR-6081 0 1 0
chr20:2655675|2656034 hsa-miR-6090 1 0 0
chr20:2655675|2656034 hsa-miR-6132 0 1 0
chr20:2655675|2656034 hsa-miR-6860 0 1 0
chr20:2655675|2656034 hsa-miR-8085 1 1 0
chr20:2655675|2656034 hsa-miR-8089 1 0 0
chr20:2655675|2656034 hsa-miR-9898 0 1 0
chr20:2655675|2656034 hsa-miR-12122 0 1 0
chr20:2655675|2656034 hsa-miR-135a-3p 1 1 0
chr20:2655675|2656034 hsa-miR-3150a-3p 0 1 0
chr20:2655675|2656034 hsa-miR-7106-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6825-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6857-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4687-3p 1 0 0
chr20:2655675|2656034 hsa-miR-6799-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6746-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6762-3p 1 1 0
chr20:2655675|2656034 hsa-miR-191-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6849-3p 0 1 0
chr20:2655675|2656034 hsa-miR-7110-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6871-5p 1 1 0
chr20:2655675|2656034 hsa-miR-185-3p 1 1 0
chr20:2655675|2656034 hsa-miR-6732-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6798-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6760-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6782-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4793-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6821-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6810-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6786-5p 1 0 0
chr20:2655675|2656034 hsa-miR-5088-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6772-3p 1 0 0
chr20:2655675|2656034 hsa-miR-4640-5p 1 0 0
chr20:2655675|2656034 hsa-miR-30c-2-3p 0 1 0
chr20:2655675|2656034 hsa-miR-4713-3p 1 0 0
chr20:2655675|2656034 hsa-miR-6749-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6501-5p 0 1 0
chr20:2655675|2656034 hsa-miR-4446-3p 1 1 0
chr20:2655675|2656034 hsa-miR-149-3p 1 0 0
chr20:2655675|2656034 hsa-miR-4781-3p 0 1 0
chr20:2655675|2656034 hsa-miR-3189-3p 1 1 0
chr20:2655675|2656034 hsa-miR-7112-5p 1 0 0
chr20:2655675|2656034 hsa-miR-3190-5p 0 1 0
chr20:2655675|2656034 hsa-miR-3191-3p 1 0 0
chr20:2655675|2656034 hsa-miR-4776-3p 0 1 0
chr20:2655675|2656034 hsa-miR-4652-5p 0 1 0
chr20:2655675|2656034 hsa-miR-744-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4746-3p 0 1 0
chr20:2655675|2656034 hsa-miR-216a-3p 0 1 0
chr20:2655675|2656034 hsa-miR-541-5p 1 0 0
chr20:2655675|2656034 hsa-miR-5589-3p 0 1 0
chr20:2655675|2656034 hsa-miR-3144-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4796-3p 0 1 0
chr20:2655675|2656034 hsa-miR-367-5p 0 1 0
chr20:2655675|2656034 hsa-miR-744-3p 0 1 0
chr20:2655675|2656034 hsa-miR-1207-5p 1 0 0
chr20:2655675|2656034 hsa-miR-1233-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4763-3p 1 0 0
chr20:2655675|2656034 hsa-miR-6769b-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6778-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6870-5p 1 0 0
chr20:2655675|2656034 hsa-miR-1343-5p 1 0 0
chr20:2655675|2656034 hsa-miR-5001-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6726-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6737-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6752-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6756-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6803-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6813-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6851-5p 1 1 0
chr20:2655675|2656034 hsa-miR-7110-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6722-3p 1 0 0
chr20:2655675|2656034 hsa-miR-6763-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6774-5p 1 0 0
chr20:2655675|2656034 hsa-miR-7111-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6780b-5p 0 1 0
chr20:2655675|2656034 hsa-miR-6836-5p 1 1 0
chr20:2655675|2656034 hsa-miR-328-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4685-5p 1 0 0
chr20:2655675|2656034 hsa-miR-4725-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6794-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6795-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6846-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6848-5p 1 1 0
chr20:2655675|2656034 hsa-miR-6858-5p 1 0 0
chr20:2655675|2656034 hsa-miR-6887-5p 1 0 0
chr20:2655675|2656034 hsa-miR-3187-5p 0 1 0
chr20:2655675|2656034 hsa-miR-3199 1 0 0
chr20:2655675|2656034 hsa-miR-365a-5p 1 0 0
chr20:2655675|2656034 hsa-miR-365b-5p 1 0 0
chr20:2655675|2656034 hsa-miR-30c-1-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6766-5p 0 1 0
chr20:2655675|2656034 hsa-miR-6791-5p 1 0 0
chr20:2655675|2656034 hsa-miR-9851-5p 0 1 0
chr20:2655675|2656034 hsa-miR-6511a-3p 0 1 0
chr20:2655675|2656034 hsa-miR-6884-5p 1 0 0
chr20:2655675|2656034 hsa-miR-216b-3p 0 1 0
chr20:2655675|2656034 hsa-miR-1912-5p 0 1 0
chr20:2655675|2656034 hsa-miR-200c-5p 1 0 0
chr20:2655675|2656034 hsa-miR-3681-3p 0 1 0
chr20:2655675|2656034 hsa-miR-301a-5p 0 1 0
chr20:2655675|2656034 hsa-miR-373-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:2655675|2656034
ORF Type ORF1
Protein Length 100
Nucleotide Length 303
Protein Sequence LNRAFSAPRICTVDAGYLARLVRLPACAMRRAPTWRESQGSSQRNELLTCPVARQPCSPPPHQAQLGKTWWVTKYSSAGAHGNSPYSPIFESPVTHRFPN
Nucleotide Sequence CTGAACAGGGCCTTTTCAGCCCCAAGGATCTGCACTGTGGATGCTGGATACTTGGCCAGGTTGGTGAGGCTGCCAGCATGTGCGATGAGACGTGCACCTACCTGGAGAGAGAGTCAAGGAAGCAGTCAGAGAAATGAACTGCTGACCTGCCCAGTTGCACGACAGCCCTGCTCCCCACCTCCCCATCAAGCACAACTAGGGAAGACATGGTGGGTCACGAAATACAGCAGTGCAGGTGCACATGGCAACAGTCCTTATTCTCCCATTTTTGAGTCCCCTGTGACGCACCGCTTCCCCAATTAG
CircID chr20:2655675|2656034
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MHCGCWILGQVGEAASMCDETCTYLERESRKQSEK
Nucleotide Sequence CTGCACTGTGGATGCTGGATACTTGGCCAGGTTGGTGAGGCTGCCAGCATGTGCGATGAGACGTGCACCTACCTGGAGAGAGAGTCAAGGAAGCAGTCAGAGAAATGA
CircID chr20:2655675|2656034
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MPSCTTALLPTSPSSTTREDMVGHEIQQCRCTWQQSLFSHF
Nucleotide Sequence CTGCCCAGTTGCACGACAGCCCTGCTCCCCACCTCCCCATCAAGCACAACTAGGGAAGACATGGTGGGTCACGAAATACAGCAGTGCAGGTGCACATGGCAACAGTCCTTATTCTCCCATTTTTGA
CircID chr20:2655675|2656034
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MRSKMSQVAPSLSALIGEAVRHRGLKNGRIRTVAMCTCTAVFRDPPCLP
Nucleotide Sequence CTGCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGAAGCGGTGCGTCACAGGGGACTCAAAAATGGGAGAATAAGGACTGTTGCCATGTGCACCTGCACTGCTGTATTTCGTGACCCACCATGTCTTCCCTAG
CircID chr20:2655675|2656034
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MCLMGRWGAGLSCNWAGQQFISLTASLTLSPGRCTSHRTCWQPHQPGQVSSIHSADPWG
Nucleotide Sequence TTGTGCTTGATGGGGAGGTGGGGAGCAGGGCTGTCGTGCAACTGGGCAGGTCAGCAGTTCATTTCTCTGACTGCTTCCTTGACTCTCTCTCCAGGTAGGTGCACGTCTCATCGCACATGCTGGCAGCCTCACCAACCTGGCCAAGTATCCAGCATCCACAGTGCAGATCCTTGGGGCTGA
CircID chr20:2655675|2656034
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MSSLVVLDGEVGSRAVVQLGRSAVHFSDCFLDSLSR
Nucleotide Sequence ATGTCTTCCCTAGTTGTGCTTGATGGGGAGGTGGGGAGCAGGGCTGTCGTGCAACTGGGCAGGTCAGCAGTTCATTTCTCTGACTGCTTCCTTGACTCTCTCTCCAGGTAG
CircID chr20:2655675|2656034
ORF Type ORF7
Protein Length 26
Nucleotide Length 78
Protein Sequence MLAASPTWPSIQHPQCRSLGLKRPCS
Nucleotide Sequence ATGCTGGCAGCCTCACCAACCTGGCCAAGTATCCAGCATCCACAGTGCAGATCCTTGGGGCTGAAAAGGCCCTGTTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab