CircRNA Information

General Information
circRNA Basic Information
CircID chr20:2657380|2657570
Strand +
CircType exon
Host Gene ENSG00000101361.13;
Algorism CIRI2;
Sequence CTCCCTGCCCCCATCCCCACTGTGAAACACGACCACCTCCGGACACACGTCTGATAATAAGCAGAGCAGGAATTTACACTACCCCAGGTTGAGGACTCCTGGGAGGCAGCCGAGGACAGAACACACATGCCCAGGGAACGGGTGTGAGCTACAACCAGCTCTCTGGGCTCTTGAGCAAGTTCAGCACCTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:2657380|2657570 hsa-miR-27a-5p 0 0 1
chr20:2657380|2657570 hsa-miR-27a-3p 0 0 1
chr20:2657380|2657570 hsa-miR-27b-5p 0 0 1
chr20:2657380|2657570 hsa-miR-27b-3p 0 0 1
chr20:2657380|2657570 hsa-miR-370-5p 0 0 1
chr20:2657380|2657570 hsa-miR-370-3p 0 0 1
chr20:2657380|2657570 hsa-miR-335-5p 0 0 1
chr20:2657380|2657570 hsa-miR-335-3p 0 0 1
chr20:2657380|2657570 hsa-miR-612 1 1 1
chr20:2657380|2657570 hsa-miR-665 0 0 1
chr20:2657380|2657570 hsa-miR-1178-5p 0 0 1
chr20:2657380|2657570 hsa-miR-1178-3p 0 0 1
chr20:2657380|2657570 hsa-miR-1228-5p 0 0 1
chr20:2657380|2657570 hsa-miR-1228-3p 0 0 1
chr20:2657380|2657570 hsa-miR-1203 0 0 1
chr20:2657380|2657570 hsa-miR-491-5p 0 0 1
chr20:2657380|2657570 hsa-miR-486-3p 0 0 1
chr20:2657380|2657570 hsa-miR-361-5p 0 1 1
chr20:2657380|2657570 hsa-miR-490-3p 0 0 1
chr20:2657380|2657570 hsa-miR-1289 0 1 1
chr20:2657380|2657570 hsa-miR-513a-5p 0 0 1
chr20:2657380|2657570 hsa-miR-1207-5p 0 1 1
chr20:2657380|2657570 hsa-miR-342-3p 0 0 1
chr20:2657380|2657570 hsa-miR-142-3p 0 1 1
chr20:2657380|2657570 hsa-miR-1274a 0 0 1
chr20:2657380|2657570 hsa-miR-128 0 0 1
chr20:2657380|2657570 hsa-miR-323-5p 0 0 1
chr20:2657380|2657570 hsa-miR-1285 0 0 1
chr20:2657380|2657570 hsa-miR-453 0 0 1
chr20:2657380|2657570 hsa-miR-220a 0 0 1
chr20:2657380|2657570 hsa-miR-326 1 0 0
chr20:2657380|2657570 hsa-miR-608 1 0 0
chr20:2657380|2657570 hsa-miR-637 1 0 0
chr20:2657380|2657570 hsa-miR-661 1 0 0
chr20:2657380|2657570 hsa-miR-1268a 1 0 0
chr20:2657380|2657570 hsa-miR-4253 1 0 0
chr20:2657380|2657570 hsa-miR-4292 1 0 0
chr20:2657380|2657570 hsa-miR-1268b 1 0 0
chr20:2657380|2657570 hsa-miR-4487 0 1 0
chr20:2657380|2657570 hsa-miR-4651 1 0 0
chr20:2657380|2657570 hsa-miR-4669 1 1 0
chr20:2657380|2657570 hsa-miR-6860 0 1 0
chr20:2657380|2657570 hsa-miR-9985 0 1 0
chr20:2657380|2657570 hsa-miR-6840-3p 0 1 0
chr20:2657380|2657570 hsa-miR-323a-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6836-3p 0 1 0
chr20:2657380|2657570 hsa-miR-6825-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6857-5p 0 1 0
chr20:2657380|2657570 hsa-miR-6799-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6741-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6762-3p 1 1 0
chr20:2657380|2657570 hsa-miR-8069 1 0 0
chr20:2657380|2657570 hsa-miR-7108-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6782-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6882-3p 0 1 0
chr20:2657380|2657570 hsa-miR-6786-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6852-5p 1 1 0
chr20:2657380|2657570 hsa-miR-939-3p 1 0 0
chr20:2657380|2657570 hsa-miR-3677-3p 1 0 0
chr20:2657380|2657570 hsa-miR-642b-5p 0 1 0
chr20:2657380|2657570 hsa-miR-4743-3p 0 1 0
chr20:2657380|2657570 hsa-miR-4787-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6739-3p 1 0 0
chr20:2657380|2657570 hsa-miR-6886-5p 1 0 0
chr20:2657380|2657570 hsa-miR-194-3p 0 1 0
chr20:2657380|2657570 hsa-miR-4638-5p 0 1 0
chr20:2657380|2657570 hsa-miR-1238-3p 0 1 0
chr20:2657380|2657570 hsa-miR-3670 0 1 0
chr20:2657380|2657570 hsa-miR-5587-3p 1 0 0
chr20:2657380|2657570 hsa-miR-6888-3p 0 1 0
chr20:2657380|2657570 hsa-miR-6865-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6737-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6752-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6756-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6803-5p 0 1 0
chr20:2657380|2657570 hsa-miR-6819-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6842-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6851-5p 1 1 0
chr20:2657380|2657570 hsa-miR-7110-5p 1 1 0
chr20:2657380|2657570 hsa-miR-4745-5p 1 0 0
chr20:2657380|2657570 hsa-miR-3187-5p 1 1 0
chr20:2657380|2657570 hsa-miR-4700-5p 0 1 0
chr20:2657380|2657570 hsa-miR-10398-3p 1 1 0
chr20:2657380|2657570 hsa-miR-3689d 0 1 0
chr20:2657380|2657570 hsa-miR-6791-5p 1 0 0
chr20:2657380|2657570 hsa-miR-6805-3p 0 1 0
chr20:2657380|2657570 hsa-miR-330-5p 1 1 0
chr20:2657380|2657570 hsa-miR-6814-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:2657380|2657570
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MRTPGRQPRTEHTCPGNGCELQPALWALEQVQHL
Nucleotide Sequence TTGAGGACTCCTGGGAGGCAGCCGAGGACAGAACACACATGCCCAGGGAACGGGTGTGAGCTACAACCAGCTCTCTGGGCTCTTGAGCAAGTTCAGCACCTA
CircID chr20:2657380|2657570
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MGGSRGQNTHAQGTGVSYNQLSGLLSKFSTY
Nucleotide Sequence CTGGGAGGCAGCCGAGGACAGAACACACATGCCCAGGGAACGGGTGTGAGCTACAACCAGCTCTCTGGGCTCTTGAGCAAGTTCAGCACCTAT
CircID chr20:2657380|2657570
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MVVAHTRSLGMCVLSSAASQESSTWGSVNSCSAYYQTCVRRWSCFTVGMGAG
Nucleotide Sequence CTGGTTGTAGCTCACACCCGTTCCCTGGGCATGTGTGTTCTGTCCTCGGCTGCCTCCCAGGAGTCCTCAACCTGGGGTAGTGTAAATTCCTGCTCTGCTTATTATCAGACGTGTGTCCGGAGGTGGTCGTGTTTCACAGTGGGGATGGGGGCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab