CircRNA Information

General Information
circRNA Basic Information
CircID chr20:2837812|2837952
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTGCCAGTTGACTGTACCCCCACCCCCCAGCTGTGGGCTTCTTTGCTTCTGCCACACTGCCTGGATGGCCCTTCCTCCCTGTCTTTCCACTCCTCACACCCATGCCCCATTTCTTTCCTGTTAATCTGTTGGGTAGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:2837812|2837952 hsa-miR-34a-5p 0 0 1
chr20:2837812|2837952 hsa-miR-34a-3p 0 0 1
chr20:2837812|2837952 hsa-miR-449a 1 0 1
chr20:2837812|2837952 hsa-miR-608 1 1 1
chr20:2837812|2837952 hsa-miR-609 0 0 1
chr20:2837812|2837952 hsa-miR-637 0 0 1
chr20:2837812|2837952 hsa-miR-449b-5p 0 0 1
chr20:2837812|2837952 hsa-miR-449b-3p 0 0 1
chr20:2837812|2837952 hsa-miR-298 1 1 1
chr20:2837812|2837952 hsa-miR-1294 0 0 1
chr20:2837812|2837952 hsa-miR-1321 0 0 1
chr20:2837812|2837952 hsa-miR-486-3p 1 0 1
chr20:2837812|2837952 hsa-miR-1207-3p 0 0 1
chr20:2837812|2837952 hsa-miR-1207-5p 1 0 1
chr20:2837812|2837952 hsa-miR-34c-5p 1 1 1
chr20:2837812|2837952 hsa-miR-1308 0 0 1
chr20:2837812|2837952 hsa-miR-644 0 0 1
chr20:2837812|2837952 hsa-miR-762 1 0 0
chr20:2837812|2837952 hsa-miR-1268a 1 0 0
chr20:2837812|2837952 hsa-miR-2861 1 0 0
chr20:2837812|2837952 hsa-miR-3138 1 0 0
chr20:2837812|2837952 hsa-miR-3147 1 0 0
chr20:2837812|2837952 hsa-miR-3153 1 0 0
chr20:2837812|2837952 hsa-miR-3154 1 0 0
chr20:2837812|2837952 hsa-miR-4302 0 1 0
chr20:2837812|2837952 hsa-miR-4306 1 0 0
chr20:2837812|2837952 hsa-miR-4259 1 0 0
chr20:2837812|2837952 hsa-miR-4260 1 0 0
chr20:2837812|2837952 hsa-miR-4253 1 0 0
chr20:2837812|2837952 hsa-miR-4270 1 1 0
chr20:2837812|2837952 hsa-miR-3937 1 0 0
chr20:2837812|2837952 hsa-miR-3945 1 0 0
chr20:2837812|2837952 hsa-miR-1268b 1 1 0
chr20:2837812|2837952 hsa-miR-4441 0 1 0
chr20:2837812|2837952 hsa-miR-4462 1 0 0
chr20:2837812|2837952 hsa-miR-4466 1 0 0
chr20:2837812|2837952 hsa-miR-4476 1 1 0
chr20:2837812|2837952 hsa-miR-4488 1 0 0
chr20:2837812|2837952 hsa-miR-4506 1 0 0
chr20:2837812|2837952 hsa-miR-4514 1 0 0
chr20:2837812|2837952 hsa-miR-4515 1 0 0
chr20:2837812|2837952 hsa-miR-4525 1 0 0
chr20:2837812|2837952 hsa-miR-3978 1 1 0
chr20:2837812|2837952 hsa-miR-4644 1 0 0
chr20:2837812|2837952 hsa-miR-4651 1 1 0
chr20:2837812|2837952 hsa-miR-4673 1 1 0
chr20:2837812|2837952 hsa-miR-4689 1 0 0
chr20:2837812|2837952 hsa-miR-4692 1 1 0
chr20:2837812|2837952 hsa-miR-4706 1 0 0
chr20:2837812|2837952 hsa-miR-4739 1 1 0
chr20:2837812|2837952 hsa-miR-4784 1 0 0
chr20:2837812|2837952 hsa-miR-5093 1 0 0
chr20:2837812|2837952 hsa-miR-5192 1 0 0
chr20:2837812|2837952 hsa-miR-5194 1 0 0
chr20:2837812|2837952 hsa-miR-5698 1 0 0
chr20:2837812|2837952 hsa-miR-5739 1 0 0
chr20:2837812|2837952 hsa-miR-5787 1 0 0
chr20:2837812|2837952 hsa-miR-6090 1 0 0
chr20:2837812|2837952 hsa-miR-6165 1 0 0
chr20:2837812|2837952 hsa-miR-6745 1 0 0
chr20:2837812|2837952 hsa-miR-7150 1 0 0
chr20:2837812|2837952 hsa-miR-8089 1 0 0
chr20:2837812|2837952 hsa-miR-12115 1 0 0
chr20:2837812|2837952 hsa-miR-4433b-3p 1 1 0
chr20:2837812|2837952 hsa-miR-6734-5p 1 0 0
chr20:2837812|2837952 hsa-miR-504-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6747-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4433a-3p 1 0 0
chr20:2837812|2837952 hsa-miR-671-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3150a-3p 1 0 0
chr20:2837812|2837952 hsa-miR-7106-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6894-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6857-5p 1 0 0
chr20:2837812|2837952 hsa-miR-125a-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6799-5p 1 0 0
chr20:2837812|2837952 hsa-miR-1236-5p 1 0 0
chr20:2837812|2837952 hsa-miR-1227-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6757-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6873-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6880-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6867-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4722-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6890-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6741-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6727-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3622b-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6721-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6742-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3605-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6716-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6871-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3151-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3180-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6748-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6772-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6796-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6732-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3190-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6798-5p 1 0 0
chr20:2837812|2837952 hsa-miR-1224-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6881-5p 1 0 0
chr20:2837812|2837952 hsa-miR-2467-3p 1 1 0
chr20:2837812|2837952 hsa-miR-6782-5p 1 1 0
chr20:2837812|2837952 hsa-miR-3150b-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6786-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6835-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6853-5p 1 0 0
chr20:2837812|2837952 hsa-miR-185-5p 1 0 0
chr20:2837812|2837952 hsa-miR-204-3p 1 0 0
chr20:2837812|2837952 hsa-miR-4640-5p 1 0 0
chr20:2837812|2837952 hsa-miR-296-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6771-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4787-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4446-3p 1 0 0
chr20:2837812|2837952 hsa-miR-149-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6717-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3162-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6828-5p 0 1 0
chr20:2837812|2837952 hsa-miR-5010-5p 1 0 0
chr20:2837812|2837952 hsa-miR-7112-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6895-5p 0 1 0
chr20:2837812|2837952 hsa-miR-6869-5p 1 0 0
chr20:2837812|2837952 hsa-miR-423-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6826-5p 1 1 0
chr20:2837812|2837952 hsa-miR-1911-3p 1 0 0
chr20:2837812|2837952 hsa-miR-4727-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6868-5p 0 1 0
chr20:2837812|2837952 hsa-miR-4529-5p 0 1 0
chr20:2837812|2837952 hsa-miR-6792-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3675-5p 1 0 0
chr20:2837812|2837952 hsa-miR-1233-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4763-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6769b-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6778-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6787-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6816-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6775-5p 1 1 0
chr20:2837812|2837952 hsa-miR-1343-5p 1 0 0
chr20:2837812|2837952 hsa-miR-3180 1 0 0
chr20:2837812|2837952 hsa-miR-5001-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6737-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6752-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6756-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6803-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6819-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6842-5p 1 1 0
chr20:2837812|2837952 hsa-miR-7110-5p 1 1 0
chr20:2837812|2837952 hsa-miR-10401-5p 1 0 0
chr20:2837812|2837952 hsa-miR-11181-3p 1 0 0
chr20:2837812|2837952 hsa-miR-1249-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6722-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6751-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6763-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6779-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6797-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6808-5p 1 1 0
chr20:2837812|2837952 hsa-miR-7111-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4728-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6780b-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6862-5p 1 1 0
chr20:2837812|2837952 hsa-miR-10526-3p 1 0 0
chr20:2837812|2837952 hsa-miR-1237-5p 1 0 0
chr20:2837812|2837952 hsa-miR-328-5p 1 0 0
chr20:2837812|2837952 hsa-miR-449c-5p 1 1 0
chr20:2837812|2837952 hsa-miR-4649-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4685-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4701-3p 1 0 0
chr20:2837812|2837952 hsa-miR-4725-3p 1 0 0
chr20:2837812|2837952 hsa-miR-4726-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4745-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6729-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6738-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6777-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6795-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6846-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6848-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6858-5p 1 1 0
chr20:2837812|2837952 hsa-miR-6883-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6887-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6889-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4697-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6831-5p 1 0 0
chr20:2837812|2837952 hsa-miR-34b-5p 0 1 0
chr20:2837812|2837952 hsa-miR-6511a-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6511b-5p 1 0 0
chr20:2837812|2837952 hsa-miR-1914-3p 1 0 0
chr20:2837812|2837952 hsa-miR-4665-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6855-5p 1 0 0
chr20:2837812|2837952 hsa-miR-4646-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6876-5p 1 1 0
chr20:2837812|2837952 hsa-miR-541-3p 1 0 0
chr20:2837812|2837952 hsa-miR-6766-5p 1 1 0
chr20:2837812|2837952 hsa-miR-4667-5p 1 0 0
chr20:2837812|2837952 hsa-miR-6849-5p 1 0 0
chr20:2837812|2837952 hsa-miR-135a-2-3p 1 0 0
chr20:2837812|2837952 hsa-miR-2682-5p 0 1 0
chr20:2837812|2837952 hsa-miR-200c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:2837812|2837952
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MYPHPPAVGFFASATLPGWPFLPVFPLLTPMPHFFPVNLLGRT
Nucleotide Sequence CTGTACCCCCACCCCCCAGCTGTGGGCTTCTTTGCTTCTGCCACACTGCCTGGATGGCCCTTCCTCCCTGTCTTTCCACTCCTCACACCCATGCCCCATTTCTTTCCTGTTAATCTGTTGGGTAGGACC
CircID chr20:2837812|2837952
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence LPVDCTPTPQLWASLLLPHCLDGPSSLSFHSSHPCPISFLLICWVG
Nucleotide Sequence CTGCCAGTTGACTGTACCCCCACCCCCCAGCTGTGGGCTTCTTTGCTTCTGCCACACTGCCTGGATGGCCCTTCCTCCCTGTCTTTCCACTCCTCACACCCATGCCCCATTTCTTTCCTGTTAATCTGTTGGGTAGGA
CircID chr20:2837812|2837952
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MTVPPPPSCGLLCFCHTAWMALPPCLSTPHTHAPFLSC
Nucleotide Sequence TTGACTGTACCCCCACCCCCCAGCTGTGGGCTTCTTTGCTTCTGCCACACTGCCTGGATGGCCCTTCCTCCCTGTCTTTCCACTCCTCACACCCATGCCCCATTTCTTTCCTGTTAA
CircID chr20:2837812|2837952
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MGHGCEEWKDREEGPSRQCGRSKEAHSWGVGVQSTGR
Nucleotide Sequence ATGGGGCATGGGTGTGAGGAGTGGAAAGACAGGGAGGAAGGGCCATCCAGGCAGTGTGGCAGAAGCAAAGAAGCCCACAGCTGGGGGGTGGGGGTACAGTCAACTGGCAGG
CircID chr20:2837812|2837952
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MGVRSGKTGRKGHPGSVAEAKKPTAGGWGYSQLA
Nucleotide Sequence ATGGGTGTGAGGAGTGGAAAGACAGGGAGGAAGGGCCATCCAGGCAGTGTGGCAGAAGCAAAGAAGCCCACAGCTGGGGGGTGGGGGTACAGTCAACTGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab