CircRNA Information

General Information
circRNA Basic Information
CircID chr20:2838605|2838892
Strand +
CircType exon
Host Gene ENSG00000132635.15;
Algorism CIRI2;
Sequence CTGCCCCGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGGTTGGGGCGAGGGAAAGGGGAATACTGGTTGGGGCTGGAAGTACGGCTGAGGCAGTCCACCCTTGTGCTCTTGCCCACCCTGTGTGTTATCCAACAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGGGGAACGTATCACTGGGGGTTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:2838605|2838892 hsa-miR-31-5p 0 0 1
chr20:2838605|2838892 hsa-miR-31-3p 0 0 1
chr20:2838605|2838892 hsa-miR-214-5p 0 0 1
chr20:2838605|2838892 hsa-miR-214-3p 0 0 1
chr20:2838605|2838892 hsa-miR-136-5p 0 0 1
chr20:2838605|2838892 hsa-miR-136-3p 0 0 1
chr20:2838605|2838892 hsa-miR-185-5p 0 0 1
chr20:2838605|2838892 hsa-miR-185-3p 0 0 1
chr20:2838605|2838892 hsa-miR-335-5p 0 0 1
chr20:2838605|2838892 hsa-miR-335-3p 0 0 1
chr20:2838605|2838892 hsa-miR-133b 0 0 1
chr20:2838605|2838892 hsa-miR-503-5p 0 0 1
chr20:2838605|2838892 hsa-miR-503-3p 0 0 1
chr20:2838605|2838892 hsa-miR-619-5p 0 0 1
chr20:2838605|2838892 hsa-miR-619-3p 0 0 1
chr20:2838605|2838892 hsa-miR-634 0 0 1
chr20:2838605|2838892 hsa-miR-890 0 0 1
chr20:2838605|2838892 hsa-miR-541-5p 0 0 1
chr20:2838605|2838892 hsa-miR-541-3p 0 0 1
chr20:2838605|2838892 hsa-miR-940 0 0 1
chr20:2838605|2838892 hsa-miR-1226-5p 0 0 1
chr20:2838605|2838892 hsa-miR-1226-3p 0 0 1
chr20:2838605|2838892 hsa-miR-1261 0 0 1
chr20:2838605|2838892 hsa-miR-1267 0 0 1
chr20:2838605|2838892 hsa-miR-1288-5p 0 0 1
chr20:2838605|2838892 hsa-miR-1288-3p 0 0 1
chr20:2838605|2838892 hsa-miR-1827 0 1 1
chr20:2838605|2838892 hsa-miR-486-3p 0 0 1
chr20:2838605|2838892 hsa-miR-490-3p 0 1 1
chr20:2838605|2838892 hsa-miR-423-5p 0 0 1
chr20:2838605|2838892 hsa-miR-654-5p 0 1 1
chr20:2838605|2838892 hsa-miR-361-3p 0 1 1
chr20:2838605|2838892 hsa-miR-642 0 0 1
chr20:2838605|2838892 hsa-miR-220c 0 0 1
chr20:2838605|2838892 hsa-miR-1269 0 0 1
chr20:2838605|2838892 hsa-miR-219-1-3p 0 0 1
chr20:2838605|2838892 hsa-miR-133a 0 0 1
chr20:2838605|2838892 hsa-miR-198 1 0 0
chr20:2838605|2838892 hsa-miR-638 1 0 0
chr20:2838605|2838892 hsa-miR-761 0 1 0
chr20:2838605|2838892 hsa-miR-1269a 0 1 0
chr20:2838605|2838892 hsa-miR-4254 0 1 0
chr20:2838605|2838892 hsa-miR-4457 0 1 0
chr20:2838605|2838892 hsa-miR-4514 0 1 0
chr20:2838605|2838892 hsa-miR-1269b 0 1 0
chr20:2838605|2838892 hsa-miR-4530 1 1 0
chr20:2838605|2838892 hsa-miR-4644 0 1 0
chr20:2838605|2838892 hsa-miR-11399 0 1 0
chr20:2838605|2838892 hsa-miR-4665-3p 1 0 0
chr20:2838605|2838892 hsa-miR-4433a-3p 0 1 0
chr20:2838605|2838892 hsa-miR-6765-5p 1 0 0
chr20:2838605|2838892 hsa-miR-3150a-3p 1 1 0
chr20:2838605|2838892 hsa-miR-4687-3p 1 0 0
chr20:2838605|2838892 hsa-miR-6720-5p 0 1 0
chr20:2838605|2838892 hsa-miR-766-3p 1 0 0
chr20:2838605|2838892 hsa-miR-6881-3p 0 1 0
chr20:2838605|2838892 hsa-miR-3692-3p 0 1 0
chr20:2838605|2838892 hsa-miR-219a-1-3p 0 1 0
chr20:2838605|2838892 hsa-miR-8071 0 1 0
chr20:2838605|2838892 hsa-miR-6089 1 0 0
chr20:2838605|2838892 hsa-miR-4722-5p 0 1 0
chr20:2838605|2838892 hsa-miR-6721-5p 0 1 0
chr20:2838605|2838892 hsa-miR-6787-3p 1 0 0
chr20:2838605|2838892 hsa-miR-5006-5p 1 0 0
chr20:2838605|2838892 hsa-miR-6803-3p 0 1 0
chr20:2838605|2838892 hsa-miR-4690-5p 0 1 0
chr20:2838605|2838892 hsa-miR-4713-3p 1 0 0
chr20:2838605|2838892 hsa-miR-4446-5p 0 1 0
chr20:2838605|2838892 hsa-miR-4733-3p 0 1 0
chr20:2838605|2838892 hsa-miR-6866-5p 0 1 0
chr20:2838605|2838892 hsa-miR-605-5p 0 1 0
chr20:2838605|2838892 hsa-miR-4707-5p 1 0 0
chr20:2838605|2838892 hsa-let-7i-5p 0 1 0
chr20:2838605|2838892 hsa-miR-4742-3p 0 1 0
chr20:2838605|2838892 hsa-miR-6793-3p 0 1 0
chr20:2838605|2838892 hsa-miR-597-3p 0 1 0
chr20:2838605|2838892 hsa-miR-1911-5p 1 0 0
chr20:2838605|2838892 hsa-miR-5699-5p 0 1 0
chr20:2838605|2838892 hsa-miR-5002-3p 0 1 0
chr20:2838605|2838892 hsa-miR-4763-3p 1 1 0
chr20:2838605|2838892 hsa-miR-6893-5p 0 1 0
chr20:2838605|2838892 hsa-miR-1343-5p 1 0 0
chr20:2838605|2838892 hsa-miR-6743-5p 0 1 0
chr20:2838605|2838892 hsa-miR-6756-5p 0 1 0
chr20:2838605|2838892 hsa-miR-6808-5p 0 1 0
chr20:2838605|2838892 hsa-miR-4632-5p 1 0 0
chr20:2838605|2838892 hsa-miR-6511b-5p 1 1 0
chr20:2838605|2838892 hsa-miR-10398-3p 1 0 0
chr20:2838605|2838892 hsa-miR-3184-5p 0 1 0
chr20:2838605|2838892 hsa-miR-6791-5p 1 0 0
chr20:2838605|2838892 hsa-miR-6529-5p 0 1 0
chr20:2838605|2838892 hsa-miR-10392-3p 1 0 0
chr20:2838605|2838892 hsa-miR-6512-3p 0 1 0
chr20:2838605|2838892 hsa-miR-33b-3p 1 0 0
chr20:2838605|2838892 hsa-miR-3619-5p 1 1 0
chr20:2838605|2838892 hsa-miR-4670-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:2838605|2838892
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MCSCPPCVLSNRYGRCSMESYRENLERVFVRMDQVLPDSCLLVWNMAMPLGERITGGFL
Nucleotide Sequence TTGTGCTCTTGCCCACCCTGTGTGTTATCCAACAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGGGGAACGTATCACTGGGGGTTTCCTC
CircID chr20:2838605|2838892
ORF Type ORF2
Protein Length 86
Nucleotide Length 258
Protein Sequence MPLGSLQVGARERGILVGAGSTAEAVHPCALAHPVCYPTDMVAAQWRATGRTWSGCLCAWTKYCQTPACWCGTWRCPSGNVSLGVS
Nucleotide Sequence CTGCCTCTGGGATCTCTCCAGGTTGGGGCGAGGGAAAGGGGAATACTGGTTGGGGCTGGAAGTACGGCTGAGGCAGTCCACCCTTGTGCTCTTGCCCACCCTGTGTGTTATCCAACAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGGGGAACGTATCACTGGGGGTTTCC
CircID chr20:2838605|2838892
ORF Type ORF3
Protein Length 92
Nucleotide Length 276
Protein Sequence MVIINSCLWDLSRLGRGKGEYWLGLEVRLRQSTLVLLPTLCVIQQIWSLLNGELPGEPGAGVCAHGPSIARLLPAGVEHGDAPRGTYHWGFP
Nucleotide Sequence CTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGGTTGGGGCGAGGGAAAGGGGAATACTGGTTGGGGCTGGAAGTACGGCTGAGGCAGTCCACCCTTGTGCTCTTGCCCACCCTGTGTGTTATCCAACAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAACCTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGGGGAACGTATCACTGGGGGTTTCCT
CircID chr20:2838605|2838892
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MFHTSRQESGNTWSMRTNTRSRFSR
Nucleotide Sequence ATGTTCCACACCAGCAGGCAGGAGTCTGGCAATACTTGGTCCATGCGCACAAACACCCGCTCCAGGTTCTCCCGGTAG
CircID chr20:2838605|2838892
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MLDNTQGGQEHKGGLPQPYFQPQPVFPFPSPQPGEIPEAGVDDHQVRG
Nucleotide Sequence CTGTTGGATAACACACAGGGTGGGCAAGAGCACAAGGGTGGACTGCCTCAGCCGTACTTCCAGCCCCAACCAGTATTCCCCTTTCCCTCGCCCCAACCTGGAGAGATCCCAGAGGCAGGAGTTGATGATCACCAGGTCCGGGGC
CircID chr20:2838605|2838892
ORF Type ORF6
Protein Length 74
Nucleotide Length 222
Protein Sequence MAILGPCAQTPAPGSPGSSPLSSDHICWITHRVGKSTRVDCLSRTSSPNQYSPFPRPNLERSQRQELMITRSGA
Nucleotide Sequence CTGGCAATACTTGGTCCATGCGCACAAACACCCGCTCCAGGTTCTCCCGGTAGCTCTCCATTGAGCAGCGACCATATCTGTTGGATAACACACAGGGTGGGCAAGAGCACAAGGGTGGACTGCCTCAGCCGTACTTCCAGCCCCAACCAGTATTCCCCTTTCCCTCGCCCCAACCTGGAGAGATCCCAGAGGCAGGAGTTGATGATCACCAGGTCCGGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab