CircRNA Information

General Information
circRNA Basic Information
CircID chr20:31567975|31568156
Strand -
CircType exon
Host Gene ENSG00000101294.15;
Algorism CIRI2;
Sequence AAGACAGTTCTGCTCTCTGCTCCTTGGAAAGGAAGTCTCTGTCCTCCCTTAGTCTTTCCCTATCCATCTCTTTTTTTCTGTCTCTTCTCTCTCTCTCACACAGCTACGAGTCCTCGGCGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCCCCACAGTCTCGGGCTCCCCAGCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:31567975|31568156 hsa-miR-611 0 1 1
chr20:31567975|31568156 hsa-miR-617 0 1 1
chr20:31567975|31568156 hsa-miR-939-5p 0 0 1
chr20:31567975|31568156 hsa-miR-939-3p 0 0 1
chr20:31567975|31568156 hsa-miR-940 0 1 1
chr20:31567975|31568156 hsa-miR-1253 0 0 1
chr20:31567975|31568156 hsa-miR-1262 0 0 1
chr20:31567975|31568156 hsa-miR-1321 0 0 1
chr20:31567975|31568156 hsa-miR-1827 0 0 1
chr20:31567975|31568156 hsa-miR-491-5p 0 0 1
chr20:31567975|31568156 hsa-miR-876-5p 0 0 1
chr20:31567975|31568156 hsa-miR-762 1 0 0
chr20:31567975|31568156 hsa-miR-922 0 1 0
chr20:31567975|31568156 hsa-miR-2278 0 1 0
chr20:31567975|31568156 hsa-miR-3131 0 1 0
chr20:31567975|31568156 hsa-miR-3132 1 0 0
chr20:31567975|31568156 hsa-miR-3134 0 1 0
chr20:31567975|31568156 hsa-miR-3138 1 0 0
chr20:31567975|31568156 hsa-miR-3153 1 1 0
chr20:31567975|31568156 hsa-miR-3175 1 0 0
chr20:31567975|31568156 hsa-miR-4298 1 0 0
chr20:31567975|31568156 hsa-miR-4271 1 1 0
chr20:31567975|31568156 hsa-miR-4476 1 0 0
chr20:31567975|31568156 hsa-miR-4499 1 0 0
chr20:31567975|31568156 hsa-miR-4644 1 1 0
chr20:31567975|31568156 hsa-miR-4656 1 0 0
chr20:31567975|31568156 hsa-miR-4689 1 0 0
chr20:31567975|31568156 hsa-miR-4739 1 1 0
chr20:31567975|31568156 hsa-miR-4751 1 0 0
chr20:31567975|31568156 hsa-miR-5698 0 1 0
chr20:31567975|31568156 hsa-miR-5739 1 0 0
chr20:31567975|31568156 hsa-miR-5787 1 1 0
chr20:31567975|31568156 hsa-miR-6088 1 0 0
chr20:31567975|31568156 hsa-miR-6090 1 0 0
chr20:31567975|31568156 hsa-miR-6127 1 0 0
chr20:31567975|31568156 hsa-miR-6133 1 0 0
chr20:31567975|31568156 hsa-miR-8085 1 0 0
chr20:31567975|31568156 hsa-miR-8089 1 1 0
chr20:31567975|31568156 hsa-miR-4731-5p 1 1 0
chr20:31567975|31568156 hsa-miR-6765-5p 1 0 0
chr20:31567975|31568156 hsa-miR-3150a-3p 0 1 0
chr20:31567975|31568156 hsa-miR-7106-5p 1 1 0
chr20:31567975|31568156 hsa-miR-6825-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6857-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6728-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6833-5p 1 0 0
chr20:31567975|31568156 hsa-miR-1236-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6089 1 0 0
chr20:31567975|31568156 hsa-miR-6757-5p 1 0 0
chr20:31567975|31568156 hsa-miR-7847-3p 1 0 0
chr20:31567975|31568156 hsa-miR-6867-5p 0 1 0
chr20:31567975|31568156 hsa-miR-6746-5p 1 0 0
chr20:31567975|31568156 hsa-miR-7160-5p 1 0 0
chr20:31567975|31568156 hsa-miR-197-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6796-5p 0 1 0
chr20:31567975|31568156 hsa-miR-6827-5p 1 1 0
chr20:31567975|31568156 hsa-miR-1224-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6760-5p 1 0 0
chr20:31567975|31568156 hsa-miR-5088-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6740-5p 1 0 0
chr20:31567975|31568156 hsa-miR-1229-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6847-5p 1 0 0
chr20:31567975|31568156 hsa-miR-3648 1 0 0
chr20:31567975|31568156 hsa-miR-6824-5p 1 0 0
chr20:31567975|31568156 hsa-miR-3162-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6892-5p 0 1 0
chr20:31567975|31568156 hsa-miR-423-5p 0 1 0
chr20:31567975|31568156 hsa-miR-6818-5p 1 1 0
chr20:31567975|31568156 hsa-miR-5004-5p 0 1 0
chr20:31567975|31568156 hsa-miR-6761-5p 1 0 0
chr20:31567975|31568156 hsa-miR-1207-5p 1 0 0
chr20:31567975|31568156 hsa-miR-4763-3p 1 0 0
chr20:31567975|31568156 hsa-miR-6778-5p 1 1 0
chr20:31567975|31568156 hsa-miR-6775-5p 1 0 0
chr20:31567975|31568156 hsa-miR-1343-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6726-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6752-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6756-5p 1 0 0
chr20:31567975|31568156 hsa-miR-10401-5p 1 0 0
chr20:31567975|31568156 hsa-miR-1249-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6763-5p 1 1 0
chr20:31567975|31568156 hsa-miR-6780a-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6788-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6797-5p 1 1 0
chr20:31567975|31568156 hsa-miR-3620-5p 1 0 0
chr20:31567975|31568156 hsa-miR-4728-5p 1 1 0
chr20:31567975|31568156 hsa-miR-5196-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6780b-5p 1 1 0
chr20:31567975|31568156 hsa-miR-328-5p 1 0 0
chr20:31567975|31568156 hsa-miR-4725-3p 1 1 0
chr20:31567975|31568156 hsa-miR-6735-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6795-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6887-5p 1 0 0
chr20:31567975|31568156 hsa-miR-4723-5p 1 1 0
chr20:31567975|31568156 hsa-miR-4758-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6511a-5p 1 0 0
chr20:31567975|31568156 hsa-miR-3198 1 0 0
chr20:31567975|31568156 hsa-miR-6731-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6758-5p 1 0 0
chr20:31567975|31568156 hsa-miR-7843-5p 0 1 0
chr20:31567975|31568156 hsa-miR-4700-5p 0 1 0
chr20:31567975|31568156 hsa-miR-4667-5p 0 1 0
chr20:31567975|31568156 hsa-miR-6849-5p 1 0 0
chr20:31567975|31568156 hsa-miR-6724-5p 1 0 0
chr20:31567975|31568156 hsa-miR-4756-5p 0 1 0
chr20:31567975|31568156 hsa-miR-516a-3p 0 1 0
chr20:31567975|31568156 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:31567975|31568156
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MLSAPWKGSLCPPLVFPYPSLFFCLFSLSHTATSPRRKSCLIPRGSPTSPQSRAPQP
Nucleotide Sequence CTGCTCTCTGCTCCTTGGAAAGGAAGTCTCTGTCCTCCCTTAGTCTTTCCCTATCCATCTCTTTTTTTCTGTCTCTTCTCTCTCTCTCACACAGCTACGAGTCCTCGGCGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCCCCACAGTCTCGGGCTCCCCAGCCA
CircID chr20:31567975|31568156
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MERKSLSSLSLSLSISFFLSLLSLSHSYESSAEILPHTPRLTHFPTVSGSPAS
Nucleotide Sequence TTGGAAAGGAAGTCTCTGTCCTCCCTTAGTCTTTCCCTATCCATCTCTTTTTTTCTGTCTCTTCTCTCTCTCTCACACAGCTACGAGTCCTCGGCGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCCCCACAGTCTCGGGCTCCCCAGCCAGC
CircID chr20:31567975|31568156
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MCERERRDRKKEMDRERLREDRDFLSKEQRAELS
Nucleotide Sequence CTGTGTGAGAGAGAGAGAAGAGACAGAAAAAAAGAGATGGATAGGGAAAGACTAAGGGAGGACAGAGACTTCCTTTCCAAGGAGCAGAGAGCAGAACTGTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab