CircRNA Information

General Information
circRNA Basic Information
CircID chr20:31605478|31605759
Strand +
CircType exon
Host Gene ENSG00000125968.8;
Algorism CIRI2;
Sequence CGGCAGCCCTCGGCCCCCGGGGGTTCCAACTTCGGATTCCGAGTTCAGCTCCAACTGAAGGTCCCTGATGTAGTCGATGACGTGCTGGAGAATCTCCACCTTGCTCACCTTGCGGTTCTGGGGCAGGGTGGGCACCAGCTCCTTGAGGCGTGAGTAACAGCCGTTCATGTCGTAGAGCAGCACGTTTACCTGCTGCTCGTCCAGCAGGGCAGGCAGGCGCGCCCCGGCGCCCCCGGCGCAGCGCGAGATGGCCACGCTCTGCTCAGACAGACAGCGCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:31605478|31605759 hsa-miR-15a-5p 0 0 1
chr20:31605478|31605759 hsa-miR-15a-3p 0 0 1
chr20:31605478|31605759 hsa-miR-214-5p 0 0 1
chr20:31605478|31605759 hsa-miR-214-3p 0 0 1
chr20:31605478|31605759 hsa-miR-15b-5p 0 0 1
chr20:31605478|31605759 hsa-miR-15b-3p 0 0 1
chr20:31605478|31605759 hsa-miR-195-5p 0 0 1
chr20:31605478|31605759 hsa-miR-195-3p 0 0 1
chr20:31605478|31605759 hsa-miR-370-5p 0 0 1
chr20:31605478|31605759 hsa-miR-370-3p 0 0 1
chr20:31605478|31605759 hsa-miR-424-5p 0 0 1
chr20:31605478|31605759 hsa-miR-424-3p 0 0 1
chr20:31605478|31605759 hsa-miR-497-5p 0 0 1
chr20:31605478|31605759 hsa-miR-497-3p 0 0 1
chr20:31605478|31605759 hsa-miR-598-5p 0 0 1
chr20:31605478|31605759 hsa-miR-598-3p 0 0 1
chr20:31605478|31605759 hsa-miR-620 1 0 1
chr20:31605478|31605759 hsa-miR-626 -4 0 1
chr20:31605478|31605759 hsa-miR-766-5p 0 0 1
chr20:31605478|31605759 hsa-miR-766-3p 0 0 1
chr20:31605478|31605759 hsa-miR-675-5p 0 0 1
chr20:31605478|31605759 hsa-miR-675-3p 0 0 1
chr20:31605478|31605759 hsa-miR-874-5p 0 0 1
chr20:31605478|31605759 hsa-miR-874-3p 0 0 1
chr20:31605478|31605759 hsa-miR-708-5p 0 0 1
chr20:31605478|31605759 hsa-miR-708-3p 0 0 1
chr20:31605478|31605759 hsa-miR-887-5p 0 0 1
chr20:31605478|31605759 hsa-miR-887-3p 0 0 1
chr20:31605478|31605759 hsa-miR-1204 0 0 1
chr20:31605478|31605759 hsa-miR-1287-5p 0 0 1
chr20:31605478|31605759 hsa-miR-1287-3p 0 0 1
chr20:31605478|31605759 hsa-miR-1270 0 0 1
chr20:31605478|31605759 hsa-miR-146b-3p -2 0 1
chr20:31605478|31605759 hsa-miR-28-5p 0 0 1
chr20:31605478|31605759 hsa-miR-338-3p -6 0 1
chr20:31605478|31605759 hsa-miR-324-3p 0 0 1
chr20:31605478|31605759 hsa-miR-337-5p -9 0 1
chr20:31605478|31605759 hsa-miR-515-5p -1 0 1
chr20:31605478|31605759 hsa-miR-16 0 0 1
chr20:31605478|31605759 hsa-miR-138 0 0 1
chr20:31605478|31605759 hsa-miR-499-3p 0 0 1
chr20:31605478|31605759 hsa-miR-422a -12 1 0
chr20:31605478|31605759 hsa-miR-637 -9 1 0
chr20:31605478|31605759 hsa-miR-761 -4 1 0
chr20:31605478|31605759 hsa-miR-1291 0 1 0
chr20:31605478|31605759 hsa-miR-3195 -8 1 0
chr20:31605478|31605759 hsa-miR-378c -20 1 0
chr20:31605478|31605759 hsa-miR-378e -13 1 0
chr20:31605478|31605759 hsa-miR-378f -14 1 0
chr20:31605478|31605759 hsa-miR-378h -11 1 0
chr20:31605478|31605759 hsa-miR-4518 -13 1 0
chr20:31605478|31605759 hsa-miR-378i -14 1 0
chr20:31605478|31605759 hsa-miR-4539 -15 1 0
chr20:31605478|31605759 hsa-miR-6860 -12 1 0
chr20:31605478|31605759 hsa-miR-9899 -13 1 0
chr20:31605478|31605759 hsa-miR-12114 -5 1 0
chr20:31605478|31605759 hsa-miR-128-1-5p -9 1 0
chr20:31605478|31605759 hsa-miR-6747-3p -2 1 0
chr20:31605478|31605759 hsa-miR-3692-5p -4 1 0
chr20:31605478|31605759 hsa-miR-6840-5p -9 1 0
chr20:31605478|31605759 hsa-miR-3187-3p -12 1 0
chr20:31605478|31605759 hsa-miR-503-5p -8 1 0
chr20:31605478|31605759 hsa-miR-6874-5p -10 1 0
chr20:31605478|31605759 hsa-miR-4793-5p -11 1 0
chr20:31605478|31605759 hsa-miR-4763-5p -5 1 0
chr20:31605478|31605759 hsa-miR-6894-3p 1 1 0
chr20:31605478|31605759 hsa-miR-4787-5p -10 1 0
chr20:31605478|31605759 hsa-miR-3160-3p -11 1 0
chr20:31605478|31605759 hsa-miR-6877-5p -13 1 0
chr20:31605478|31605759 hsa-miR-3120-5p -9 1 0
chr20:31605478|31605759 hsa-miR-6720-3p -1 1 0
chr20:31605478|31605759 hsa-miR-6752-3p -5 1 0
chr20:31605478|31605759 hsa-miR-3620-3p -6 1 0
chr20:31605478|31605759 hsa-miR-16-5p -3 1 0
chr20:31605478|31605759 hsa-miR-6729-5p -12 1 0
chr20:31605478|31605759 hsa-miR-3187-5p -13 1 0
chr20:31605478|31605759 hsa-miR-10394-3p -11 1 0
chr20:31605478|31605759 hsa-miR-365b-5p -20 1 0
chr20:31605478|31605759 hsa-miR-378a-3p -18 1 0
chr20:31605478|31605759 hsa-miR-3619-5p -7 1 0
chr20:31605478|31605759 hsa-miR-217-5p -16 1 0
chr20:31605478|31605759 hsa-miR-5699-3p -2 1 0
chr20:31605478|31605759 hsa-miR-378d -15 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:31605478|31605759
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MKVPDVVDDVLENLHLAHLAVLGQGGHQLLEA
Nucleotide Sequence CTGAAGGTCCCTGATGTAGTCGATGACGTGCTGGAGAATCTCCACCTTGCTCACCTTGCGGTTCTGGGGCAGGGTGGGCACCAGCTCCTTGAGGCGTGA
CircID chr20:31605478|31605759
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLLVQQGRQARPGAPGAARDGHALLRQTAHH
Nucleotide Sequence CTGCTGCTCGTCCAGCAGGGCAGGCAGGCGCGCCCCGGCGCCCCCGGCGCAGCGCGAGATGGCCACGCTCTGCTCAGACAGACAGCGCACCAC
CircID chr20:31605478|31605759
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MTCWRISTLLTLRFWGRVGTSSLRRE
Nucleotide Sequence ATGACGTGCTGGAGAATCTCCACCTTGCTCACCTTGCGGTTCTGGGGCAGGGTGGGCACCAGCTCCTTGAGGCGTGAGTAA
CircID chr20:31605478|31605759
ORF Type ORF4
Protein Length 90
Nucleotide Length 270
Protein Sequence MSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTPGGRGLP
Nucleotide Sequence CTGTCTGAGCAGAGCGTGGCCATCTCGCGCTGCGCCGGGGGCGCCGGGGCGCGCCTGCCTGCCCTGCTGGACGAGCAGCAGGTAAACGTGCTGCTCTACGACATGAACGGCTGTTACTCACGCCTCAAGGAGCTGGTGCCCACCCTGCCCCAGAACCGCAAGGTGAGCAAGGTGGAGATTCTCCAGCACGTCATCGACTACATCAGGGACCTTCAGTTGGAGCTGAACTCGGAATCCGAAGTTGGAACCCCCGGGGGCCGAGGGCTGCCG
CircID chr20:31605478|31605759
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MSRAWPSRAAPGAPGRACLPCWTSSR
Nucleotide Sequence CTGAGCAGAGCGTGGCCATCTCGCGCTGCGCCGGGGGCGCCGGGGCGCGCCTGCCTGCCCTGCTGGACGAGCAGCAGGTAA
CircID chr20:31605478|31605759
ORF Type ORF6
Protein Length 80
Nucleotide Length 240
Protein Sequence MRRGRRGAPACPAGRAAGKRAALRHERLLLTPQGAGAHPAPEPQGEQGGDSPARHRLHQGPSVGAELGIRSWNPRGPRAA
Nucleotide Sequence CTGCGCCGGGGGCGCCGGGGCGCGCCTGCCTGCCCTGCTGGACGAGCAGCAGGTAAACGTGCTGCTCTACGACATGAACGGCTGTTACTCACGCCTCAAGGAGCTGGTGCCCACCCTGCCCCAGAACCGCAAGGTGAGCAAGGTGGAGATTCTCCAGCACGTCATCGACTACATCAGGGACCTTCAGTTGGAGCTGAACTCGGAATCCGAAGTTGGAACCCCCGGGGGCCGAGGGCTGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab