CircRNA Information

General Information
circRNA Basic Information
CircID chr20:32447399|32447616
Strand +
CircType exon
Host Gene ENSG00000197183.11;
Algorism CIRI2;
Sequence CTCATCCTACAGCAGAACTGACCCCACCGGCACCTGGAGCGCACTGCCCTAGGGAAGGAGGCTGTCCCAGCCTGGACCTGGCTTCCTGCCTCACCAGTTGGTACATTTTGTTTTTGAAAGAGGTGGGATCCAAAAGAGCTGTTTCTAGCCACACTCCAAGCACCTGAGACTTTGGGCACAAGGACACTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:32447399|32447616 hsa-miR-34a-5p 0 0 1
chr20:32447399|32447616 hsa-miR-34a-3p 0 0 1
chr20:32447399|32447616 hsa-miR-223-5p 0 0 1
chr20:32447399|32447616 hsa-miR-223-3p 0 0 1
chr20:32447399|32447616 hsa-miR-122-5p 0 0 1
chr20:32447399|32447616 hsa-miR-122-3p 0 0 1
chr20:32447399|32447616 hsa-miR-449a 0 1 1
chr20:32447399|32447616 hsa-miR-432-5p 0 0 1
chr20:32447399|32447616 hsa-miR-432-3p 0 0 1
chr20:32447399|32447616 hsa-miR-607 0 0 1
chr20:32447399|32447616 hsa-miR-636 0 0 1
chr20:32447399|32447616 hsa-miR-449b-5p 0 0 1
chr20:32447399|32447616 hsa-miR-449b-3p 0 0 1
chr20:32447399|32447616 hsa-miR-940 0 1 1
chr20:32447399|32447616 hsa-miR-1255a 0 0 1
chr20:32447399|32447616 hsa-miR-1265 0 0 1
chr20:32447399|32447616 hsa-miR-1266-5p 0 0 1
chr20:32447399|32447616 hsa-miR-1266-3p 0 0 1
chr20:32447399|32447616 hsa-miR-1827 0 0 1
chr20:32447399|32447616 hsa-miR-671-5p 1 1 1
chr20:32447399|32447616 hsa-miR-125a-3p 0 0 1
chr20:32447399|32447616 hsa-miR-615-5p 1 0 1
chr20:32447399|32447616 hsa-miR-574-5p 0 0 1
chr20:32447399|32447616 hsa-miR-1224-3p 0 0 1
chr20:32447399|32447616 hsa-miR-1302 0 0 1
chr20:32447399|32447616 hsa-miR-34c-5p 0 0 1
chr20:32447399|32447616 hsa-miR-582-3p 0 0 1
chr20:32447399|32447616 hsa-miR-1260 0 0 1
chr20:32447399|32447616 hsa-miR-1280 0 0 1
chr20:32447399|32447616 hsa-miR-1255b 0 0 1
chr20:32447399|32447616 hsa-miR-644 0 0 1
chr20:32447399|32447616 hsa-miR-578 0 1 0
chr20:32447399|32447616 hsa-miR-663a 1 0 0
chr20:32447399|32447616 hsa-miR-1248 0 1 0
chr20:32447399|32447616 hsa-miR-1260a 0 1 0
chr20:32447399|32447616 hsa-miR-1260b 0 1 0
chr20:32447399|32447616 hsa-miR-3665 1 0 0
chr20:32447399|32447616 hsa-miR-3907 1 0 0
chr20:32447399|32447616 hsa-miR-4489 1 0 0
chr20:32447399|32447616 hsa-miR-4519 1 0 0
chr20:32447399|32447616 hsa-miR-4651 1 0 0
chr20:32447399|32447616 hsa-miR-4710 0 1 0
chr20:32447399|32447616 hsa-miR-6081 1 0 0
chr20:32447399|32447616 hsa-miR-7704 1 0 0
chr20:32447399|32447616 hsa-miR-6747-5p 1 1 0
chr20:32447399|32447616 hsa-miR-6765-5p 0 1 0
chr20:32447399|32447616 hsa-miR-125b-1-3p 1 0 0
chr20:32447399|32447616 hsa-miR-27a-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6799-5p 1 0 0
chr20:32447399|32447616 hsa-miR-1227-5p 1 0 0
chr20:32447399|32447616 hsa-miR-4722-5p 0 1 0
chr20:32447399|32447616 hsa-miR-24-3p 1 0 0
chr20:32447399|32447616 hsa-miR-6759-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6742-5p 1 1 0
chr20:32447399|32447616 hsa-miR-3151-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6793-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6796-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6881-5p 1 0 0
chr20:32447399|32447616 hsa-miR-7855-5p 0 1 0
chr20:32447399|32447616 hsa-miR-6786-5p 1 1 0
chr20:32447399|32447616 hsa-miR-1226-5p 1 0 0
chr20:32447399|32447616 hsa-miR-4786-3p 0 1 0
chr20:32447399|32447616 hsa-miR-130b-5p 0 1 0
chr20:32447399|32447616 hsa-miR-4763-3p 1 0 0
chr20:32447399|32447616 hsa-miR-6812-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6737-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6756-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6819-5p 1 0 0
chr20:32447399|32447616 hsa-miR-7110-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6763-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6808-5p 0 1 0
chr20:32447399|32447616 hsa-miR-449c-5p 1 0 0
chr20:32447399|32447616 hsa-miR-4632-5p 1 0 0
chr20:32447399|32447616 hsa-miR-4745-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6735-5p 1 1 0
chr20:32447399|32447616 hsa-miR-7843-5p 0 1 0
chr20:32447399|32447616 hsa-miR-1914-3p 1 0 0
chr20:32447399|32447616 hsa-miR-6855-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6791-3p 0 1 0
chr20:32447399|32447616 hsa-miR-6791-5p 1 0 0
chr20:32447399|32447616 hsa-miR-6874-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:32447399|32447616
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MERTALGKEAVPAWTWLPASPVGTFCF
Nucleotide Sequence CTGGAGCGCACTGCCCTAGGGAAGGAGGCTGTCCCAGCCTGGACCTGGCTTCCTGCCTCACCAGTTGGTACATTTTGTTTTTGA
CircID chr20:32447399|32447616
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MFLATLQAPETLGTRTLFFFFFFFFG
Nucleotide Sequence CTGTTTCTAGCCACACTCCAAGCACCTGAGACTTTGGGCACAAGGACACTTTTTTTTTTTTTTTTTTTTTTTTTTGGA
CircID chr20:32447399|32447616
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSQPGPGFLPHQLVHFVFERGGIQKSCF
Nucleotide Sequence CTGTCCCAGCCTGGACCTGGCTTCCTGCCTCACCAGTTGGTACATTTTGTTTTTGAAAGAGGTGGGATCCAAAAGAGCTGTTTCTAG
CircID chr20:32447399|32447616
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MTPPAPGAHCPREGGCPSLDLASCLTSWYILFLKEVGSKRAVSSHTPST
Nucleotide Sequence CTGACCCCACCGGCACCTGGAGCGCACTGCCCTAGGGAAGGAGGCTGTCCCAGCCTGGACCTGGCTTCCTGCCTCACCAGTTGGTACATTTTGTTTTTGAAAGAGGTGGGATCCAAAAGAGCTGTTTCTAGCCACACTCCAAGCACCTGA
CircID chr20:32447399|32447616
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MCPKSQVLGVWLETALLDPTSFKNKMYQLVRQEARSRLGQPPSLGQCAPGAGGVSSAVG
Nucleotide Sequence TTGTGCCCAAAGTCTCAGGTGCTTGGAGTGTGGCTAGAAACAGCTCTTTTGGATCCCACCTCTTTCAAAAACAAAATGTACCAACTGGTGAGGCAGGAAGCCAGGTCCAGGCTGGGACAGCCTCCTTCCCTAGGGCAGTGCGCTCCAGGTGCCGGTGGGGTCAGTTCTGCTGTAGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab