CircRNA Information

General Information
circRNA Basic Information
CircID chr20:33408060|33408218
Strand +
CircType exon
Host Gene ENSG00000101400.5;
Algorism CIRI2;
Sequence CTGCCCCTGTGCGGATCCTGACCCCAGCCAACAGCTGAGCTGCCGGGCCTCCTCGAGGCCCCTAAGCCACCCCCAGAGGTCCCATCTGAAGCTGGAGTACCCTGGGGTCAGCAGCAAGAGAAAGAAGAGGAGATTTTCTGTTTGTTTTTCCCCTCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:33408060|33408218 hsa-miR-326 0 0 1
chr20:33408060|33408218 hsa-miR-495-5p 0 0 1
chr20:33408060|33408218 hsa-miR-495-3p 0 0 1
chr20:33408060|33408218 hsa-miR-608 1 1 1
chr20:33408060|33408218 hsa-miR-611 0 0 1
chr20:33408060|33408218 hsa-miR-637 0 1 1
chr20:33408060|33408218 hsa-miR-647 0 0 1
chr20:33408060|33408218 hsa-miR-766-5p 0 0 1
chr20:33408060|33408218 hsa-miR-766-3p 0 0 1
chr20:33408060|33408218 hsa-miR-486-3p 0 0 1
chr20:33408060|33408218 hsa-miR-615-5p 0 0 1
chr20:33408060|33408218 hsa-miR-423-5p 0 0 1
chr20:33408060|33408218 hsa-miR-508-5p 0 0 1
chr20:33408060|33408218 hsa-miR-1207-3p 0 0 1
chr20:33408060|33408218 hsa-miR-628-5p 0 0 1
chr20:33408060|33408218 hsa-miR-330-5p 0 1 1
chr20:33408060|33408218 hsa-miR-151-5p 0 0 1
chr20:33408060|33408218 hsa-miR-220c 0 0 1
chr20:33408060|33408218 hsa-miR-638 1 0 0
chr20:33408060|33408218 hsa-miR-762 1 1 0
chr20:33408060|33408218 hsa-miR-1538 0 1 0
chr20:33408060|33408218 hsa-miR-3196 1 0 0
chr20:33408060|33408218 hsa-miR-4298 1 0 0
chr20:33408060|33408218 hsa-miR-1268b 1 0 0
chr20:33408060|33408218 hsa-miR-4488 1 0 0
chr20:33408060|33408218 hsa-miR-4651 1 1 0
chr20:33408060|33408218 hsa-miR-5572 1 0 0
chr20:33408060|33408218 hsa-miR-5787 1 1 0
chr20:33408060|33408218 hsa-miR-8075 1 0 0
chr20:33408060|33408218 hsa-miR-8089 1 0 0
chr20:33408060|33408218 hsa-miR-9718 0 1 0
chr20:33408060|33408218 hsa-miR-4747-3p 0 1 0
chr20:33408060|33408218 hsa-miR-6734-5p 0 1 0
chr20:33408060|33408218 hsa-miR-7155-5p 0 1 0
chr20:33408060|33408218 hsa-miR-125b-1-3p 1 0 0
chr20:33408060|33408218 hsa-miR-6825-5p 0 1 0
chr20:33408060|33408218 hsa-miR-4687-3p 1 1 0
chr20:33408060|33408218 hsa-miR-3622a-5p 0 1 0
chr20:33408060|33408218 hsa-miR-7160-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6842-3p 1 1 0
chr20:33408060|33408218 hsa-miR-8069 1 0 0
chr20:33408060|33408218 hsa-miR-6871-5p 1 0 0
chr20:33408060|33408218 hsa-miR-877-3p 0 1 0
chr20:33408060|33408218 hsa-miR-6732-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6881-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6782-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6810-5p 1 0 0
chr20:33408060|33408218 hsa-miR-5008-5p 0 1 0
chr20:33408060|33408218 hsa-miR-7109-5p 1 0 0
chr20:33408060|33408218 hsa-miR-92b-5p 1 0 0
chr20:33408060|33408218 hsa-miR-4713-3p 0 1 0
chr20:33408060|33408218 hsa-miR-4787-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6789-5p 0 1 0
chr20:33408060|33408218 hsa-miR-4661-3p 0 1 0
chr20:33408060|33408218 hsa-miR-6841-5p 0 1 0
chr20:33408060|33408218 hsa-miR-4763-3p 1 0 0
chr20:33408060|33408218 hsa-miR-6812-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6737-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6752-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6756-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6803-5p 1 1 0
chr20:33408060|33408218 hsa-miR-6819-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6842-5p 0 1 0
chr20:33408060|33408218 hsa-miR-6851-5p 1 0 0
chr20:33408060|33408218 hsa-miR-7110-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6722-3p 1 0 0
chr20:33408060|33408218 hsa-miR-6751-5p 0 1 0
chr20:33408060|33408218 hsa-miR-3620-5p 1 0 0
chr20:33408060|33408218 hsa-miR-1237-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6887-5p 0 1 0
chr20:33408060|33408218 hsa-miR-365a-5p 0 1 0
chr20:33408060|33408218 hsa-miR-3940-5p 1 0 0
chr20:33408060|33408218 hsa-miR-6855-5p 1 0 0
chr20:33408060|33408218 hsa-miR-4716-3p 0 1 0
chr20:33408060|33408218 hsa-miR-6724-5p 1 0 0
chr20:33408060|33408218 hsa-miR-769-3p 1 1 0
chr20:33408060|33408218 hsa-miR-6764-5p 0 1 0
chr20:33408060|33408218 hsa-miR-5195-3p 1 0 0
chr20:33408060|33408218 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:33408060|33408218
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MPGLLEAPKPPPEVPSEAGVPWGQQQEKEEEIFCLFFPSA
Nucleotide Sequence CTGCCGGGCCTCCTCGAGGCCCCTAAGCCACCCCCAGAGGTCCCATCTGAAGCTGGAGTACCCTGGGGTCAGCAGCAAGAGAAAGAAGAGGAGATTTTCTGTTTGTTTTTCCCCTCAGCC
CircID chr20:33408060|33408218
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MSCRASSRPLSHPQRSHLKLEYPGVSSKRKKRRFSVCFSPQ
Nucleotide Sequence CTGAGCTGCCGGGCCTCCTCGAGGCCCCTAAGCCACCCCCAGAGGTCCCATCTGAAGCTGGAGTACCCTGGGGTCAGCAGCAAGAGAAAGAAGAGGAGATTTTCTGTTTGTTTTTCCCCTCAG
CircID chr20:33408060|33408218
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MLLTPGYSSFRWDLWGWLRGLEEARQLSCWLGSGSAQGQ
Nucleotide Sequence TTGCTGCTGACCCCAGGGTACTCCAGCTTCAGATGGGACCTCTGGGGGTGGCTTAGGGGCCTCGAGGAGGCCCGGCAGCTCAGCTGTTGGCTGGGGTCAGGATCCGCACAGGGGCAG
CircID chr20:33408060|33408218
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence LRGKTNRKSPLLSLAADPRVLQLQMGPLGVA
Nucleotide Sequence CTGAGGGGAAAAACAAACAGAAAATCTCCTCTTCTTTCTCTTGCTGCTGACCCCAGGGTACTCCAGCTTCAGATGGGACCTCTGGGGGTGGCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab