CircRNA Information

General Information
circRNA Basic Information
CircID chr20:33619517|33623296
Strand +
CircType exon
Host Gene ENSG00000078699.21;
Algorism find_circ;CIRI2;DCC;
Sequence AACTCAACAGTGACAATTGAGGAATTCCACTGTAAGCTCCAAGAAGCCACAAACTTTCCCCTTCGTCCTTTTGTGATTCCATTTCTCAAGCTTTTGGCCAGTCACGGTGGTTCACACCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATTGCATGAGCTCAGGAGTTCAAGACCAGACTGGCCAACATGGCAAAACCCCCGTCTCTGCCAAAAAAAAATAGAAAAAAAAAATAGCCAGGCGCTTGTAGTCCCAGCTAGTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGAAGCAGGCCAACCTGCCCCTGCTGCAGCGGGAACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTCAACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGGAAGAGGCCCAGTCCAGAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:33619517|33623296 hsa-miR-198 0 1 1
chr20:33619517|33623296 hsa-miR-149-5p 0 0 1
chr20:33619517|33623296 hsa-miR-149-3p 0 0 1
chr20:33619517|33623296 hsa-miR-370-5p 0 0 1
chr20:33619517|33623296 hsa-miR-370-3p 0 0 1
chr20:33619517|33623296 hsa-miR-335-5p 0 0 1
chr20:33619517|33623296 hsa-miR-335-3p 0 0 1
chr20:33619517|33623296 hsa-miR-345-5p 0 0 1
chr20:33619517|33623296 hsa-miR-345-3p 0 0 1
chr20:33619517|33623296 hsa-miR-619-5p 0 0 1
chr20:33619517|33623296 hsa-miR-619-3p 0 0 1
chr20:33619517|33623296 hsa-miR-421 0 1 1
chr20:33619517|33623296 hsa-miR-758-5p 0 0 1
chr20:33619517|33623296 hsa-miR-758-3p 0 0 1
chr20:33619517|33623296 hsa-miR-1178-5p 0 0 1
chr20:33619517|33623296 hsa-miR-1178-3p 0 0 1
chr20:33619517|33623296 hsa-miR-1237-5p 0 0 1
chr20:33619517|33623296 hsa-miR-1237-3p 0 0 1
chr20:33619517|33623296 hsa-miR-513c-5p 0 0 1
chr20:33619517|33623296 hsa-miR-513c-3p 0 0 1
chr20:33619517|33623296 hsa-miR-143-5p 0 1 1
chr20:33619517|33623296 hsa-miR-134-5p 0 1 1
chr20:33619517|33623296 hsa-miR-212-5p 0 1 1
chr20:33619517|33623296 hsa-miR-770-5p 0 1 1
chr20:33619517|33623296 hsa-miR-1224-5p 0 0 1
chr20:33619517|33623296 hsa-miR-1184 0 1 1
chr20:33619517|33623296 hsa-miR-525-5p 0 0 1
chr20:33619517|33623296 hsa-miR-490-5p 0 0 1
chr20:33619517|33623296 hsa-miR-767-3p 0 0 1
chr20:33619517|33623296 hsa-miR-628-5p 0 0 1
chr20:33619517|33623296 hsa-miR-324-3p 0 0 1
chr20:33619517|33623296 hsa-miR-520a-5p 0 0 1
chr20:33619517|33623296 hsa-miR-455-3p 0 0 1
chr20:33619517|33623296 hsa-miR-24 0 0 1
chr20:33619517|33623296 hsa-miR-1913 0 1 0
chr20:33619517|33623296 hsa-miR-4669 1 0 0
chr20:33619517|33623296 hsa-miR-4739 1 0 0
chr20:33619517|33623296 hsa-miR-5093 0 1 0
chr20:33619517|33623296 hsa-miR-5100 1 0 0
chr20:33619517|33623296 hsa-miR-5695 0 1 0
chr20:33619517|33623296 hsa-miR-210-5p 0 1 0
chr20:33619517|33623296 hsa-miR-6881-3p 1 1 0
chr20:33619517|33623296 hsa-miR-6799-5p 1 0 0
chr20:33619517|33623296 hsa-miR-7847-3p 1 0 0
chr20:33619517|33623296 hsa-miR-24-3p 0 1 0
chr20:33619517|33623296 hsa-miR-6721-5p 1 0 0
chr20:33619517|33623296 hsa-miR-191-3p 0 1 0
chr20:33619517|33623296 hsa-miR-3189-5p 1 0 0
chr20:33619517|33623296 hsa-miR-503-5p 1 1 0
chr20:33619517|33623296 hsa-miR-4793-3p 0 1 0
chr20:33619517|33623296 hsa-miR-4436b-5p 1 0 0
chr20:33619517|33623296 hsa-miR-4787-5p 1 0 0
chr20:33619517|33623296 hsa-miR-5584-5p 1 0 0
chr20:33619517|33623296 hsa-miR-3922-5p 1 1 0
chr20:33619517|33623296 hsa-miR-4750-5p 0 1 0
chr20:33619517|33623296 hsa-miR-5088-3p 1 0 0
chr20:33619517|33623296 hsa-miR-6768-3p 0 1 0
chr20:33619517|33623296 hsa-miR-449b-3p 0 1 0
chr20:33619517|33623296 hsa-miR-4709-5p 0 1 0
chr20:33619517|33623296 hsa-miR-4482-3p 0 1 0
chr20:33619517|33623296 hsa-miR-1343-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6752-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6803-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6851-5p 1 0 0
chr20:33619517|33623296 hsa-miR-7110-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6751-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6763-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6779-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6780a-5p 1 0 0
chr20:33619517|33623296 hsa-miR-3127-3p 1 0 0
chr20:33619517|33623296 hsa-miR-5196-5p 1 0 0
chr20:33619517|33623296 hsa-miR-328-5p 1 0 0
chr20:33619517|33623296 hsa-miR-3085-5p 1 0 0
chr20:33619517|33623296 hsa-miR-4646-5p 1 0 0
chr20:33619517|33623296 hsa-miR-4747-5p 1 0 0
chr20:33619517|33623296 hsa-miR-6893-3p 0 1 0
chr20:33619517|33623296 hsa-miR-6756-3p 1 1 0
chr20:33619517|33623296 hsa-miR-514b-5p 0 1 0
chr20:33619517|33623296 hsa-miR-4712-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:33619517|33623296
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MRNGITKGRRGKFVASWSLQWNSSIVTVE
Nucleotide Sequence TTGAGAAATGGAATCACAAAAGGACGAAGGGGAAAGTTTGTGGCTTCTTGGAGCTTACAGTGGAATTCCTCAATTGTCACTGTTGAG
CircID chr20:33619517|33623296
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MESQKDEGESLWLLGAYSGIPQLSLLS
Nucleotide Sequence ATGGAATCACAAAAGGACGAAGGGGAAAGTTTGTGGCTTCTTGGAGCTTACAGTGGAATTCCTCAATTGTCACTGTTGAGT
CircID chr20:33619517|33623296
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MGLFPFPCTSMSNSDESAGDAMLVLSRRCSC
Nucleotide Sequence CTGGGCCTCTTCCCATTTCCGTGCACCTCCATGAGCAACTCTGACGAGTCAGCAGGCGATGCAATGCTTGTGTTGAGCAGAAGGTGTTCGTGCTGA
CircID chr20:33619517|33623296
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MAARAQCSSSRCSRGRLALRNGITKGRRGKFVASWSLQWNSSIVTVE
Nucleotide Sequence TTGGCCGCCCGAGCGCAGTGCAGCAGTTCCCGCTGCAGCAGGGGCAGGTTGGCCTTGAGAAATGGAATCACAAAAGGACGAAGGGGAAAGTTTGTGGCTTCTTGGAGCTTACAGTGGAATTCCTCAATTGTCACTGTTGAG
CircID chr20:33619517|33623296
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MESQKDEGESLWLLGAYSGIPQLSLLS
Nucleotide Sequence ATGGAATCACAAAAGGACGAAGGGGAAAGTTTGTGGCTTCTTGGAGCTTACAGTGGAATTCCTCAATTGTCACTGTTGAGT
CircID chr20:33619517|33623296
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MSQVLGWGLLGRPSAVQQFPLQQGQVGLEKWNHKRTKGKVCGFLELTVEFLNCHC
Nucleotide Sequence CTGAGCCAGGTACTGGGATGGGGTCTGCTTGGCCGCCCGAGCGCAGTGCAGCAGTTCCCGCTGCAGCAGGGGCAGGTTGGCCTTGAGAAATGGAATCACAAAAGGACGAAGGGGAAAGTTTGTGGCTTCTTGGAGCTTACAGTGGAATTCCTCAATTGTCACTGTTGA
CircID chr20:33619517|33623296
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPE
Nucleotide Sequence CTGCCCCTGCTGCAGCGGGAACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTCAACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGGAAGAGGCCCAGTCCAGAG
CircID chr20:33619517|33623296
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MRSGGQADPIPVPGSARTPSAQHKHCIAC
Nucleotide Sequence CTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTCAACACAAGCATTGCATCGCCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr20:33619517|33623296 SLBP 0 0 1
chr20:33619517|33623296 MOV10 1 0 4
chr20:33619517|33623296 ELAVL1 8 1 3
chr20:33619517|33623296 ELAVL3 0 1 0
chr20:33619517|33623296 GRSF1 0 0 1
chr20:33619517|33623296 SF3B4 1 0 0
chr20:33619517|33623296 CELF2 0 2 0
chr20:33619517|33623296 PRPF8 0 6 4
chr20:33619517|33623296 RPS3 0 0 1
chr20:33619517|33623296 SRSF10 1 0 0
chr20:33619517|33623296 TAF15 2 0 0
chr20:33619517|33623296 FMR1 0 0 4
chr20:33619517|33623296 CPSF6 0 4 0
chr20:33619517|33623296 NUDT21 0 1 0
chr20:33619517|33623296 GPKOW 0 0 1
chr20:33619517|33623296 RBM15B 2 0 0
chr20:33619517|33623296 FUS 1 1 0
chr20:33619517|33623296 EFTUD2 1 0 0
chr20:33619517|33623296 SRSF7 0 1 1
chr20:33619517|33623296 CPSF4 1 0 0
chr20:33619517|33623296 SRSF1 1 5 2
chr20:33619517|33623296 NOP58 3 0 1
chr20:33619517|33623296 U2AF2 13 16 31
chr20:33619517|33623296 SRSF9 0 1 3
chr20:33619517|33623296 NOP56 1 0 0
chr20:33619517|33623296 DDX54 0 0 3
chr20:33619517|33623296 IGF2BP1 0 0 3
chr20:33619517|33623296 HNRNPK 0 0 3
chr20:33619517|33623296 FIP1L1 0 2 0
chr20:33619517|33623296 PTBP1 7 30 1
chr20:33619517|33623296 HNRNPC 16 7 8
chr20:33619517|33623296 HNRNPD 0 1 0
chr20:33619517|33623296 TRA2A 0 1 1
chr20:33619517|33623296 DHX9 0 0 9
chr20:33619517|33623296 TIAL1 0 1 0
chr20:33619517|33623296 HNRNPA1 3 2 11
chr20:33619517|33623296 QKI 0 3 1
chr20:33619517|33623296 LIN28B 0 0 1
chr20:33619517|33623296 FXR2 0 0 1
chr20:33619517|33623296 DDX59 1 0 0
chr20:33619517|33623296 RBM22 0 2 0
chr20:33619517|33623296 UCHL5 0 0 2
chr20:33619517|33623296 IGF2BP3 0 0 2
chr20:33619517|33623296 IGF2BP2 4 2 23
chr20:33619517|33623296 MBNL2 0 1 0
chr20:33619517|33623296 TARDBP 1 4 0
chr20:33619517|33623296 BUD13 2 2 5
chr20:33619517|33623296 CNBP 0 0 1
chr20:33619517|33623296 SLTM 0 0 1
chr20:33619517|33623296 CSTF2T 1 0 1
chr20:33619517|33623296 TIA1 0 1 0
chr20:33619517|33623296 TARBP2 0 0 10
chr20:33619517|33623296 CPSF7 0 1 0
chr20:33619517|33623296 XRN2 1 1 1
chr20:33619517|33623296 UPF1 0 2 0
chr20:33619517|33623296 ATXN2 0 2 0
chr20:33619517|33623296 EIF4A3 3 1 3
chr20:33619517|33623296 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab