CircRNA Information

General Information
circRNA Basic Information
CircID chr20:33853910|33854138
Strand -
CircType exon
Host Gene ENSG00000101421.3;
Algorism CIRI2;
Sequence CTGAAATGTAGCCTCTGTCCTTGTAAGTCAGTTGACTTGCCGCACATCTCTTTGTGTACTTGTACGGTACTGGCAGAAAAGTCATTTTTCAAAAGCCATAGGCTTTTCCTTGCCCTTAGCTGTAATAATGCATCTGATTTTGATTTCCTCCAGAGCTGTGTTTCTGTCCATCACCTGTGTATTGGCCCTGTGTTTACCACTCTGGCCCACTCCTCACCCCCTTGCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:33853910|33854138 hsa-miR-30a-5p 0 0 1
chr20:33853910|33854138 hsa-miR-30a-3p 0 0 1
chr20:33853910|33854138 hsa-miR-30d-5p 0 0 1
chr20:33853910|33854138 hsa-miR-30d-3p 0 0 1
chr20:33853910|33854138 hsa-miR-221-5p 0 0 1
chr20:33853910|33854138 hsa-miR-221-3p 0 0 1
chr20:33853910|33854138 hsa-miR-222-5p 0 0 1
chr20:33853910|33854138 hsa-miR-222-3p 0 0 1
chr20:33853910|33854138 hsa-miR-30b-5p 0 0 1
chr20:33853910|33854138 hsa-miR-30b-3p 0 0 1
chr20:33853910|33854138 hsa-miR-30e-5p 0 0 1
chr20:33853910|33854138 hsa-miR-30e-3p 0 0 1
chr20:33853910|33854138 hsa-miR-135b-5p 0 0 1
chr20:33853910|33854138 hsa-miR-135b-3p 0 0 1
chr20:33853910|33854138 hsa-miR-552-5p 0 0 1
chr20:33853910|33854138 hsa-miR-552-3p 0 0 1
chr20:33853910|33854138 hsa-miR-586 0 0 1
chr20:33853910|33854138 hsa-miR-624-5p 0 0 1
chr20:33853910|33854138 hsa-miR-624-3p 0 0 1
chr20:33853910|33854138 hsa-miR-765 0 0 1
chr20:33853910|33854138 hsa-miR-147b-5p 0 0 1
chr20:33853910|33854138 hsa-miR-147b-3p 0 0 1
chr20:33853910|33854138 hsa-miR-125a-3p 0 0 1
chr20:33853910|33854138 hsa-miR-770-5p 0 1 1
chr20:33853910|33854138 hsa-miR-576-3p 0 0 1
chr20:33853910|33854138 hsa-miR-556-3p 0 0 1
chr20:33853910|33854138 hsa-miR-30c 0 0 1
chr20:33853910|33854138 hsa-miR-220c 0 0 1
chr20:33853910|33854138 hsa-miR-135a 0 0 1
chr20:33853910|33854138 hsa-miR-516b 0 0 1
chr20:33853910|33854138 hsa-miR-544 0 0 1
chr20:33853910|33854138 hsa-miR-602 1 0 0
chr20:33853910|33854138 hsa-miR-762 1 0 0
chr20:33853910|33854138 hsa-miR-300 0 1 0
chr20:33853910|33854138 hsa-miR-3138 1 0 0
chr20:33853910|33854138 hsa-miR-3918 1 0 0
chr20:33853910|33854138 hsa-miR-4481 1 1 0
chr20:33853910|33854138 hsa-miR-4651 1 0 0
chr20:33853910|33854138 hsa-miR-4660 1 1 0
chr20:33853910|33854138 hsa-miR-4672 1 1 0
chr20:33853910|33854138 hsa-miR-4689 1 0 0
chr20:33853910|33854138 hsa-miR-5192 1 0 0
chr20:33853910|33854138 hsa-miR-6081 1 0 0
chr20:33853910|33854138 hsa-miR-8075 1 0 0
chr20:33853910|33854138 hsa-miR-12124 0 1 0
chr20:33853910|33854138 hsa-miR-4433b-3p 1 1 0
chr20:33853910|33854138 hsa-miR-6747-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6809-5p 0 1 0
chr20:33853910|33854138 hsa-miR-4433a-3p 1 0 0
chr20:33853910|33854138 hsa-miR-6894-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6857-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6510-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6873-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6880-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6732-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6798-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6881-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6782-5p 1 0 0
chr20:33853910|33854138 hsa-miR-3934-3p 1 0 0
chr20:33853910|33854138 hsa-miR-6786-5p 1 0 0
chr20:33853910|33854138 hsa-miR-5088-5p 1 0 0
chr20:33853910|33854138 hsa-miR-185-5p 1 0 0
chr20:33853910|33854138 hsa-miR-4640-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6830-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6781-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6877-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6895-5p 1 1 0
chr20:33853910|33854138 hsa-miR-518c-5p 1 1 0
chr20:33853910|33854138 hsa-miR-4727-5p 0 1 0
chr20:33853910|33854138 hsa-miR-4520-2-3p 1 0 0
chr20:33853910|33854138 hsa-miR-514a-5p 0 1 0
chr20:33853910|33854138 hsa-miR-4520-3p 1 1 0
chr20:33853910|33854138 hsa-miR-4763-3p 1 0 0
chr20:33853910|33854138 hsa-miR-6812-5p 1 0 0
chr20:33853910|33854138 hsa-miR-1343-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6743-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6752-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6756-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6803-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6819-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6851-5p 1 0 0
chr20:33853910|33854138 hsa-miR-7110-5p 1 1 0
chr20:33853910|33854138 hsa-miR-11181-3p 1 0 0
chr20:33853910|33854138 hsa-miR-1249-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6722-3p 1 0 0
chr20:33853910|33854138 hsa-miR-6751-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6763-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6797-5p 1 0 0
chr20:33853910|33854138 hsa-miR-5196-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6836-5p 1 0 0
chr20:33853910|33854138 hsa-miR-10526-3p 1 0 0
chr20:33853910|33854138 hsa-miR-4649-5p 1 1 0
chr20:33853910|33854138 hsa-miR-4726-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6729-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6735-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6738-5p 1 0 0
chr20:33853910|33854138 hsa-miR-675-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6777-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6794-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6846-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6848-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6858-5p 1 1 0
chr20:33853910|33854138 hsa-miR-6889-5p 1 0 0
chr20:33853910|33854138 hsa-miR-4758-5p 1 0 0
chr20:33853910|33854138 hsa-miR-7843-5p 1 0 0
chr20:33853910|33854138 hsa-miR-3679-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6724-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6762-5p 1 0 0
chr20:33853910|33854138 hsa-miR-6837-5p 1 0 0
chr20:33853910|33854138 hsa-miR-323b-3p 0 1 0
chr20:33853910|33854138 hsa-miR-10395-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:33853910|33854138
ORF Type ORF1
Protein Length 76
Nucleotide Length 228
Protein Sequence LKCSLCPCKSVDLPHISLCTCTVLAEKSFFKSHRLFLALSCNNASDFDFLQSCVSVHHLCIGPVFTTLAHSSPPCS
Nucleotide Sequence CTGAAATGTAGCCTCTGTCCTTGTAAGTCAGTTGACTTGCCGCACATCTCTTTGTGTACTTGTACGGTACTGGCAGAAAAGTCATTTTTCAAAAGCCATAGGCTTTTCCTTGCCCTTAGCTGTAATAATGCATCTGATTTTGATTTCCTCCAGAGCTGTGTTTCTGTCCATCACCTGTGTATTGGCCCTGTGTTTACCACTCTGGCCCACTCCTCACCCCCTTGCTCC
CircID chr20:33853910|33854138
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MTCRTSLCVLVRYWQKSHFSKAIGFSLPLAVIMHLILISSRAVFLSITCVLALCLPLWPTPHPLAP
Nucleotide Sequence TTGACTTGCCGCACATCTCTTTGTGTACTTGTACGGTACTGGCAGAAAAGTCATTTTTCAAAAGCCATAGGCTTTTCCTTGCCCTTAGCTGTAATAATGCATCTGATTTTGATTTCCTCCAGAGCTGTGTTTCTGTCCATCACCTGTGTATTGGCCCTGTGTTTACCACTCTGGCCCACTCCTCACCCCCTTGCTCCC
CircID chr20:33853910|33854138
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MTFLPVPYKYTKRCAASQLTYKDRGYIS
Nucleotide Sequence ATGACTTTTCTGCCAGTACCGTACAAGTACACAAAGAGATGTGCGGCAAGTCAACTGACTTACAAGGACAGAGGCTACATTTCA
CircID chr20:33853910|33854138
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MDRNTALEEIKIRCIITAKGKEKPMAFEK
Nucleotide Sequence ATGGACAGAAACACAGCTCTGGAGGAAATCAAAATCAGATGCATTATTACAGCTAAGGGCAAGGAAAAGCCTATGGCTTTTGAAAAATGA
CircID chr20:33853910|33854138
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MKNDFSASTVQVHKEMCGKSTDLQGQRLHF
Nucleotide Sequence TTGAAAAATGACTTTTCTGCCAGTACCGTACAAGTACACAAAGAGATGTGCGGCAAGTCAACTGACTTACAAGGACAGAGGCTACATTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab