CircRNA Information

General Information
circRNA Basic Information
CircID chr20:33854063|33854141
Strand +
CircType exon
Host Gene ENSG00000101421.3;
Algorism CIRI2;
Sequence CAGGGGAGCAAGGGGGTGAGGAGTGGGCCAGAGTGGTAAACACAGGGCCAATACACAGGTGATGGACAGAAACACAGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:33854063|33854141 hsa-miR-328-5p 0 0 1
chr20:33854063|33854141 hsa-miR-328-3p 0 0 1
chr20:33854063|33854141 hsa-miR-1291 0 0 1
chr20:33854063|33854141 hsa-miR-146b-3p 0 1 1
chr20:33854063|33854141 hsa-miR-331-3p 0 0 1
chr20:33854063|33854141 hsa-miR-483-3p 1 1 1
chr20:33854063|33854141 hsa-miR-484 1 0 0
chr20:33854063|33854141 hsa-miR-4268 1 0 0
chr20:33854063|33854141 hsa-miR-4284 1 0 0
chr20:33854063|33854141 hsa-miR-6749-3p 1 0 0
chr20:33854063|33854141 hsa-miR-149-5p 1 1 0
chr20:33854063|33854141 hsa-miR-6892-3p 1 0 0
chr20:33854063|33854141 hsa-miR-7110-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6845-3p 1 0 0
chr20:33854063|33854141 hsa-miR-877-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6765-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6735-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6884-3p 0 1 0
chr20:33854063|33854141 hsa-miR-6803-3p 1 0 0
chr20:33854063|33854141 hsa-miR-4640-3p 0 1 0
chr20:33854063|33854141 hsa-miR-3190-5p 1 0 0
chr20:33854063|33854141 hsa-miR-6870-3p 0 1 0
chr20:33854063|33854141 hsa-miR-4776-3p 0 1 0
chr20:33854063|33854141 hsa-miR-1236-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6811-3p 0 1 0
chr20:33854063|33854141 hsa-miR-6813-3p 1 0 0
chr20:33854063|33854141 hsa-miR-1914-5p 1 0 0
chr20:33854063|33854141 hsa-miR-6777-3p 1 1 0
chr20:33854063|33854141 hsa-miR-6802-3p 0 1 0
chr20:33854063|33854141 hsa-miR-3124-3p 1 0 0
chr20:33854063|33854141 hsa-miR-4750-3p 1 0 0
chr20:33854063|33854141 hsa-miR-4433b-5p 1 0 0
chr20:33854063|33854141 hsa-miR-6515-3p 1 0 0
chr20:33854063|33854141 hsa-miR-4685-3p 0 1 0
chr20:33854063|33854141 hsa-miR-10398-5p 1 0 0
chr20:33854063|33854141 hsa-miR-6784-3p 0 1 0
chr20:33854063|33854141 hsa-miR-6862-3p 0 1 0
chr20:33854063|33854141 hsa-miR-6775-3p 1 1 0
chr20:33854063|33854141 hsa-miR-4723-3p 1 0 0
chr20:33854063|33854141 hsa-miR-6824-3p 1 0 0
chr20:33854063|33854141 hsa-miR-7155-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:33854063|33854141
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence LCFCPSPVYWPCVYHSGPLLTPLLP
Nucleotide Sequence CTGTGTTTCTGTCCATCACCTGTGTATTGGCCCTGTGTTTACCACTCTGGCCCACTCCTCACCCCCTTGCTCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab