CircRNA Information

General Information
circRNA Basic Information
CircID chr20:33994026|34031544
Strand +
CircType exon
Host Gene ENSG00000228265.4;
Algorism CIRI2;
Sequence CTGCCTCTGGGAATAGGGCTCACCCGCGCCGAGAGGTCTGGAGGAAGCCGCGCGGCTGGGAAGGAGGCGGTACTGCCGCACTCGGGGACGTAAGGGAGGGAGGAAAAGGGCGGCTGCGGCGGGAAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:33994026|34031544 hsa-miR-1236-5p 0 0 1
chr20:33994026|34031544 hsa-miR-1236-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1238-5p 0 0 1
chr20:33994026|34031544 hsa-miR-1238-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1249-5p 0 0 1
chr20:33994026|34031544 hsa-miR-1249-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1281 0 1 1
chr20:33994026|34031544 hsa-miR-1307-5p 0 0 1
chr20:33994026|34031544 hsa-miR-1307-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1827 0 0 1
chr20:33994026|34031544 hsa-miR-1225-3p 0 0 1
chr20:33994026|34031544 hsa-miR-516a-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1233 0 0 1
chr20:33994026|34031544 hsa-miR-886-3p 0 0 1
chr20:33994026|34031544 hsa-miR-1181 1 0 0
chr20:33994026|34031544 hsa-miR-1469 1 1 0
chr20:33994026|34031544 hsa-miR-718 1 0 0
chr20:33994026|34031544 hsa-miR-4312 1 0 0
chr20:33994026|34031544 hsa-miR-4290 1 0 0
chr20:33994026|34031544 hsa-miR-4469 1 0 0
chr20:33994026|34031544 hsa-miR-4767 1 0 0
chr20:33994026|34031544 hsa-miR-6749-3p 1 1 0
chr20:33994026|34031544 hsa-miR-18a-3p 1 0 0
chr20:33994026|34031544 hsa-miR-4665-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6836-3p 1 1 0
chr20:33994026|34031544 hsa-miR-1233-3p 0 1 0
chr20:33994026|34031544 hsa-miR-6875-3p 1 1 0
chr20:33994026|34031544 hsa-miR-7110-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6726-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6832-3p 1 1 0
chr20:33994026|34031544 hsa-miR-877-3p 0 1 0
chr20:33994026|34031544 hsa-miR-1908-3p 1 0 0
chr20:33994026|34031544 hsa-miR-7113-3p 1 0 0
chr20:33994026|34031544 hsa-miR-3667-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6821-3p 0 1 0
chr20:33994026|34031544 hsa-miR-6809-3p 1 0 0
chr20:33994026|34031544 hsa-miR-7111-3p 1 1 0
chr20:33994026|34031544 hsa-miR-4667-3p 1 0 0
chr20:33994026|34031544 hsa-miR-4646-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6743-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6869-3p 0 1 0
chr20:33994026|34031544 hsa-miR-4632-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6746-3p 1 1 0
chr20:33994026|34031544 hsa-miR-371a-3p 0 1 0
chr20:33994026|34031544 hsa-miR-6886-3p 1 0 0
chr20:33994026|34031544 hsa-miR-2277-5p 1 1 0
chr20:33994026|34031544 hsa-miR-6880-3p 1 0 0
chr20:33994026|34031544 hsa-miR-3124-3p 0 1 0
chr20:33994026|34031544 hsa-miR-130b-5p 0 1 0
chr20:33994026|34031544 hsa-miR-6851-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6734-3p 1 1 0
chr20:33994026|34031544 hsa-miR-579-5p 0 1 0
chr20:33994026|34031544 hsa-miR-4685-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6791-3p 1 1 0
chr20:33994026|34031544 hsa-miR-6756-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6792-3p 0 1 0
chr20:33994026|34031544 hsa-miR-10401-3p 1 0 0
chr20:33994026|34031544 hsa-miR-6829-3p 0 1 0
chr20:33994026|34031544 hsa-miR-3059-5p 1 0 0
chr20:33994026|34031544 hsa-miR-4723-3p 1 0 0
chr20:33994026|34031544 hsa-miR-4691-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:33994026|34031544
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LPLGIGLTRAERSGGSRAAGKEAVLPHSGT
Nucleotide Sequence CTGCCTCTGGGAATAGGGCTCACCCGCGCCGAGAGGTCTGGAGGAAGCCGCGCGGCTGGGAAGGAGGCGGTACTGCCGCACTCGGGGACGTAA
CircID chr20:33994026|34031544
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MEEAARLGRRRYCRTRGRKGGRKRAAAAGR
Nucleotide Sequence CTGGAGGAAGCCGCGCGGCTGGGAAGGAGGCGGTACTGCCGCACTCGGGGACGTAAGGGAGGGAGGAAAAGGGCGGCTGCGGCGGGAAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab