CircRNA Information

General Information
circRNA Basic Information
CircID chr20:34290332|34290575
Strand -
CircType exon
Host Gene ENSG00000101444.11;
Algorism CIRI2;
Sequence CTGCGGCTTGATGTTCACCTTCTCCACGGCGTTCTCGTTGAGCCACTTGACATCGATCTCCACGTCAAAGTGTCCAATGTTACACACAATGGCATCATCCTTCATCTGCTCAAAGTGCCTGTCAGGCAGCCCAAGACCGTGGGAGATTGTCAGGGACAGAAAGCTGTCCCAACTCTGCCCTCCTCCCTCACTCCCCGGGACCCCCCATCTGGCACCTACCGGCCAAGGATGATGTCAATACAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:34290332|34290575 hsa-miR-150-5p 0 0 1
chr20:34290332|34290575 hsa-miR-150-3p 0 0 1
chr20:34290332|34290575 hsa-miR-489-5p 0 0 1
chr20:34290332|34290575 hsa-miR-489-3p 0 0 1
chr20:34290332|34290575 hsa-miR-571 0 0 1
chr20:34290332|34290575 hsa-miR-620 0 0 1
chr20:34290332|34290575 hsa-miR-635 0 0 1
chr20:34290332|34290575 hsa-miR-662 0 0 1
chr20:34290332|34290575 hsa-miR-765 0 0 1
chr20:34290332|34290575 hsa-miR-543 0 0 1
chr20:34290332|34290575 hsa-miR-1270 0 0 1
chr20:34290332|34290575 hsa-miR-1252-5p 0 0 1
chr20:34290332|34290575 hsa-miR-1252-3p 0 0 1
chr20:34290332|34290575 hsa-miR-1321 0 0 1
chr20:34290332|34290575 hsa-miR-1322 0 0 1
chr20:34290332|34290575 hsa-miR-532-3p 0 0 1
chr20:34290332|34290575 hsa-miR-615-5p 1 0 1
chr20:34290332|34290575 hsa-miR-125a-5p 0 0 1
chr20:34290332|34290575 hsa-miR-362-5p 1 0 1
chr20:34290332|34290575 hsa-miR-1302 0 0 1
chr20:34290332|34290575 hsa-miR-125b 0 0 1
chr20:34290332|34290575 hsa-miR-24 0 0 1
chr20:34290332|34290575 hsa-miR-1201 0 0 1
chr20:34290332|34290575 hsa-miR-147 0 0 1
chr20:34290332|34290575 hsa-miR-194 0 0 1
chr20:34290332|34290575 hsa-miR-601 1 0 0
chr20:34290332|34290575 hsa-miR-638 1 0 0
chr20:34290332|34290575 hsa-miR-762 1 0 0
chr20:34290332|34290575 hsa-miR-921 1 0 0
chr20:34290332|34290575 hsa-miR-1538 1 0 0
chr20:34290332|34290575 hsa-miR-3147 1 0 0
chr20:34290332|34290575 hsa-miR-4270 1 0 0
chr20:34290332|34290575 hsa-miR-4281 1 0 0
chr20:34290332|34290575 hsa-miR-3661 1 0 0
chr20:34290332|34290575 hsa-miR-4449 1 0 0
chr20:34290332|34290575 hsa-miR-4468 1 0 0
chr20:34290332|34290575 hsa-miR-4498 1 0 0
chr20:34290332|34290575 hsa-miR-4642 1 0 0
chr20:34290332|34290575 hsa-miR-4656 1 0 0
chr20:34290332|34290575 hsa-miR-4706 1 0 0
chr20:34290332|34290575 hsa-miR-4739 1 0 0
chr20:34290332|34290575 hsa-miR-4741 1 0 0
chr20:34290332|34290575 hsa-miR-5787 1 0 0
chr20:34290332|34290575 hsa-miR-6090 1 0 0
chr20:34290332|34290575 hsa-miR-6133 1 0 0
chr20:34290332|34290575 hsa-miR-8085 1 0 0
chr20:34290332|34290575 hsa-miR-8089 1 0 0
chr20:34290332|34290575 hsa-miR-504-3p 1 0 0
chr20:34290332|34290575 hsa-miR-1247-3p 1 0 0
chr20:34290332|34290575 hsa-miR-6747-5p 1 0 0
chr20:34290332|34290575 hsa-miR-7106-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6825-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6894-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6799-5p 1 0 0
chr20:34290332|34290575 hsa-miR-3622a-5p 1 0 0
chr20:34290332|34290575 hsa-miR-5187-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6089 1 0 0
chr20:34290332|34290575 hsa-miR-6880-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6890-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4655-5p 1 0 0
chr20:34290332|34290575 hsa-miR-197-5p 1 0 0
chr20:34290332|34290575 hsa-miR-7108-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6793-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6829-5p 1 0 0
chr20:34290332|34290575 hsa-miR-23a-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6881-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6786-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6852-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6784-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4743-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4787-5p 1 0 0
chr20:34290332|34290575 hsa-miR-149-3p 1 0 0
chr20:34290332|34290575 hsa-miR-6824-5p 1 0 0
chr20:34290332|34290575 hsa-miR-3162-5p 1 0 0
chr20:34290332|34290575 hsa-miR-1233-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6769b-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6812-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6870-5p 1 0 0
chr20:34290332|34290575 hsa-miR-1343-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6743-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6752-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6803-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6819-5p 1 0 0
chr20:34290332|34290575 hsa-miR-7110-5p 1 0 0
chr20:34290332|34290575 hsa-miR-11181-3p 1 0 0
chr20:34290332|34290575 hsa-miR-1249-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6751-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6763-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6774-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6879-5p 1 0 0
chr20:34290332|34290575 hsa-miR-3620-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4728-5p 1 0 0
chr20:34290332|34290575 hsa-miR-5196-5p 1 0 0
chr20:34290332|34290575 hsa-miR-328-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4632-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4649-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4725-3p 1 0 0
chr20:34290332|34290575 hsa-miR-4745-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6729-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6735-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6777-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6795-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6846-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6848-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6858-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6887-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6889-5p 1 0 0
chr20:34290332|34290575 hsa-miR-939-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4758-5p 1 0 0
chr20:34290332|34290575 hsa-miR-3085-5p 1 0 0
chr20:34290332|34290575 hsa-miR-3940-5p 1 0 0
chr20:34290332|34290575 hsa-miR-7843-5p 1 0 0
chr20:34290332|34290575 hsa-miR-1914-3p 1 0 0
chr20:34290332|34290575 hsa-miR-4700-5p 1 0 0
chr20:34290332|34290575 hsa-miR-10398-3p 1 0 0
chr20:34290332|34290575 hsa-miR-4646-5p 1 0 0
chr20:34290332|34290575 hsa-miR-4667-5p 1 0 0
chr20:34290332|34290575 hsa-miR-6791-5p 1 0 0
chr20:34290332|34290575 hsa-miR-10400-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:34290332|34290575
ORF Type ORF1
Protein Length 81
Nucleotide Length 243
Protein Sequence LRLDVHLLHGVLVEPLDIDLHVKVSNVTHNGIILHLLKVPVRQPKTVGDCQGQKAVPTLPSSLTPRDPPSGTYRPRMMSIQ
Nucleotide Sequence CTGCGGCTTGATGTTCACCTTCTCCACGGCGTTCTCGTTGAGCCACTTGACATCGATCTCCACGTCAAAGTGTCCAATGTTACACACAATGGCATCATCCTTCATCTGCTCAAAGTGCCTGTCAGGCAGCCCAAGACCGTGGGAGATTGTCAGGGACAGAAAGCTGTCCCAACTCTGCCCTCCTCCCTCACTCCCCGGGACCCCCCATCTGGCACCTACCGGCCAAGGATGATGTCAATACAG
CircID chr20:34290332|34290575
ORF Type ORF2
Protein Length 74
Nucleotide Length 225
Protein Sequence MMFTFSTAFSLSHLTSISTSKCPMLHTMASSFICSKCLSGSPRPWEIVRDRKLSQLCPPPSLPGTPHLAPTGQG
Nucleotide Sequence TTGATGTTCACCTTCTCCACGGCGTTCTCGTTGAGCCACTTGACATCGATCTCCACGTCAAAGTGTCCAATGTTACACACAATGGCATCATCCTTCATCTGCTCAAAGTGCCTGTCAGGCAGCCCAAGACCGTGGGAGATTGTCAGGGACAGAAAGCTGTCCCAACTCTGCCCTCCTCCCTCACTCCCCGGGACCCCCCATCTGGCACCTACCGGCCAAGGATGA
CircID chr20:34290332|34290575
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MSGTESCPNSALLPHSPGPPIWHLPAKDDVNT
Nucleotide Sequence TTGTCAGGGACAGAAAGCTGTCCCAACTCTGCCCTCCTCCCTCACTCCCCGGGACCCCCCATCTGGCACCTACCGGCCAAGGATGATGTCAATACA
CircID chr20:34290332|34290575
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MSLTISHGLGLPDRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ
Nucleotide Sequence CTGTCCCTGACAATCTCCCACGGTCTTGGGCTGCCTGACAGGCACTTTGAGCAGATGAAGGATGATGCCATTGTGTGTAACATTGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTCAACGAGAACGCCGTGGAGAAGGTGAACATCAAGCCGCAG
CircID chr20:34290332|34290575
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MMPLCVTLDTLTWRSMSSGSTRTPWRR
Nucleotide Sequence ATGATGCCATTGTGTGTAACATTGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTCAACGAGAACGCCGTGGAGAAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab