CircRNA Information

General Information
circRNA Basic Information
CircID chr20:34560600|34560764
Strand -
CircType exon
Host Gene ENSG00000101464.9;
Algorism CIRI2;
Sequence CTGCCTCTTCTCCTTCCTGTCTGGGAGGGGGCTCCTTGGTGTGCAGAGCCACAAGGTGGGGGTCCAAGTTGGGGAGCTCCCAGTTCTTCCCCATAGGCCTTGCTGTCAGTCAGCCATGGGTCCCTTTTGGTACCAGAGACTTGTGACCCTGGACTCGAACCTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:34560600|34560764 hsa-miR-326 0 0 1
chr20:34560600|34560764 hsa-miR-593-5p 0 0 1
chr20:34560600|34560764 hsa-miR-593-3p 0 0 1
chr20:34560600|34560764 hsa-miR-890 0 0 1
chr20:34560600|34560764 hsa-miR-760 0 0 1
chr20:34560600|34560764 hsa-miR-920 0 0 1
chr20:34560600|34560764 hsa-miR-1253 0 0 1
chr20:34560600|34560764 hsa-miR-1263 0 0 1
chr20:34560600|34560764 hsa-miR-513b-5p 0 0 1
chr20:34560600|34560764 hsa-miR-513b-3p 0 0 1
chr20:34560600|34560764 hsa-miR-1324 0 0 1
chr20:34560600|34560764 hsa-miR-1827 0 0 1
chr20:34560600|34560764 hsa-miR-1225-3p 0 0 1
chr20:34560600|34560764 hsa-miR-1224-3p 0 1 1
chr20:34560600|34560764 hsa-miR-330-5p 0 0 1
chr20:34560600|34560764 hsa-miR-637 1 1 0
chr20:34560600|34560764 hsa-miR-4313 0 1 0
chr20:34560600|34560764 hsa-miR-4271 0 1 0
chr20:34560600|34560764 hsa-miR-3660 0 1 0
chr20:34560600|34560764 hsa-miR-4439 0 1 0
chr20:34560600|34560764 hsa-miR-4476 0 1 0
chr20:34560600|34560764 hsa-miR-4498 1 0 0
chr20:34560600|34560764 hsa-miR-4513 1 1 0
chr20:34560600|34560764 hsa-miR-4516 0 1 0
chr20:34560600|34560764 hsa-miR-4526 1 1 0
chr20:34560600|34560764 hsa-miR-4656 0 1 0
chr20:34560600|34560764 hsa-miR-4739 1 1 0
chr20:34560600|34560764 hsa-miR-8057 0 1 0
chr20:34560600|34560764 hsa-miR-8073 1 0 0
chr20:34560600|34560764 hsa-miR-12122 1 0 0
chr20:34560600|34560764 hsa-miR-12127 1 1 0
chr20:34560600|34560764 hsa-miR-125b-2-3p 1 0 0
chr20:34560600|34560764 hsa-miR-150-3p 1 0 0
chr20:34560600|34560764 hsa-miR-7106-5p 0 1 0
chr20:34560600|34560764 hsa-miR-1236-5p 1 0 0
chr20:34560600|34560764 hsa-miR-6089 1 0 0
chr20:34560600|34560764 hsa-miR-3928-3p 0 1 0
chr20:34560600|34560764 hsa-miR-6827-5p 1 0 0
chr20:34560600|34560764 hsa-miR-6735-3p 1 0 0
chr20:34560600|34560764 hsa-miR-1226-5p 1 0 0
chr20:34560600|34560764 hsa-miR-889-5p 0 1 0
chr20:34560600|34560764 hsa-miR-4713-3p 1 0 0
chr20:34560600|34560764 hsa-miR-6813-3p 1 0 0
chr20:34560600|34560764 hsa-miR-483-5p 1 1 0
chr20:34560600|34560764 hsa-miR-6859-3p 0 1 0
chr20:34560600|34560764 hsa-miR-6870-5p 1 0 0
chr20:34560600|34560764 hsa-miR-6803-5p 1 0 0
chr20:34560600|34560764 hsa-miR-5196-5p 0 1 0
chr20:34560600|34560764 hsa-miR-6780b-5p 0 1 0
chr20:34560600|34560764 hsa-miR-4685-5p 1 0 0
chr20:34560600|34560764 hsa-miR-6876-5p 0 1 0
chr20:34560600|34560764 hsa-miR-6762-5p 1 0 0
chr20:34560600|34560764 hsa-miR-3136-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:34560600|34560764
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LPLLLPVWEGAPWCAEPQGGGPSWGAPSSSP
Nucleotide Sequence CTGCCTCTTCTCCTTCCTGTCTGGGAGGGGGCTCCTTGGTGTGCAGAGCCACAAGGTGGGGGTCCAAGTTGGGGAGCTCCCAGTTCTTCCCCATAG
CircID chr20:34560600|34560764
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MSGRGLLGVQSHKVGVQVGELPVLPHRPCCQSAMGPFWYQRLVTLDSNL
Nucleotide Sequence CTGTCTGGGAGGGGGCTCCTTGGTGTGCAGAGCCACAAGGTGGGGGTCCAAGTTGGGGAGCTCCCAGTTCTTCCCCATAGGCCTTGCTGTCAGTCAGCCATGGGTCCCTTTTGGTACCAGAGACTTGTGACCCTGGACTCGAACCTC
CircID chr20:34560600|34560764
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MGGGSLVCRATRWGSKLGSSQFFPIGLAVSQPWVPFGTRDL
Nucleotide Sequence CTGGGAGGGGGCTCCTTGGTGTGCAGAGCCACAAGGTGGGGGTCCAAGTTGGGGAGCTCCCAGTTCTTCCCCATAGGCCTTGCTGTCAGTCAGCCATGGGTCCCTTTTGGTACCAGAGACTTGTGA
CircID chr20:34560600|34560764
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MTDSKAYGEELGAPQLGPPPCGSAHQGAPSQTGRRRG
Nucleotide Sequence CTGACTGACAGCAAGGCCTATGGGGAAGAACTGGGAGCTCCCCAACTTGGACCCCCACCTTGTGGCTCTGCACACCAAGGAGCCCCCTCCCAGACAGGAAGGAGAAGAGGC
CircID chr20:34560600|34560764
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MTARPMGKNWELPNLDPHLVALHTKEPPPRQEGEEA
Nucleotide Sequence CTGACAGCAAGGCCTATGGGGAAGAACTGGGAGCTCCCCAACTTGGACCCCCACCTTGTGGCTCTGCACACCAAGGAGCCCCCTCCCAGACAGGAAGGAGAAGAGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab