CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35004399|35004597
Strand +
CircType exon
Host Gene ENSG00000100991.10;
Algorism CIRI2;
Sequence CTGCTGCACCCCTGCCTCCCTCCACAGTTGCCGAGGTACTGTCTGAATGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCACGTGCAGACGCTGACCCAGGTGAGAGGCCCCGGCAGACACACAGCAGGGAAGGTCGATTGGAAACCACTTCCTTTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35004399|35004597 hsa-miR-107 0 0 1
chr20:35004399|35004597 hsa-miR-370-5p 0 0 1
chr20:35004399|35004597 hsa-miR-370-3p 0 0 1
chr20:35004399|35004597 hsa-miR-346 0 0 1
chr20:35004399|35004597 hsa-miR-632 0 0 1
chr20:35004399|35004597 hsa-miR-650 0 1 1
chr20:35004399|35004597 hsa-miR-190b-5p 0 0 1
chr20:35004399|35004597 hsa-miR-190b-3p 0 0 1
chr20:35004399|35004597 hsa-miR-940 0 0 1
chr20:35004399|35004597 hsa-miR-1229-5p 0 0 1
chr20:35004399|35004597 hsa-miR-1229-3p 0 0 1
chr20:35004399|35004597 hsa-miR-1255a 0 0 1
chr20:35004399|35004597 hsa-miR-1321 0 0 1
chr20:35004399|35004597 hsa-miR-1324 0 1 1
chr20:35004399|35004597 hsa-miR-1827 0 0 1
chr20:35004399|35004597 hsa-miR-140-5p 0 0 1
chr20:35004399|35004597 hsa-miR-1207-5p 0 0 1
chr20:35004399|35004597 hsa-miR-342-5p 0 0 1
chr20:35004399|35004597 hsa-miR-1274a 0 0 1
chr20:35004399|35004597 hsa-miR-103 0 0 1
chr20:35004399|35004597 hsa-miR-1255b 0 0 1
chr20:35004399|35004597 hsa-miR-190 0 0 1
chr20:35004399|35004597 hsa-miR-101 0 0 1
chr20:35004399|35004597 hsa-miR-661 1 0 0
chr20:35004399|35004597 hsa-miR-658 1 0 0
chr20:35004399|35004597 hsa-miR-765 1 0 0
chr20:35004399|35004597 hsa-miR-920 1 0 0
chr20:35004399|35004597 hsa-miR-1268a 1 0 0
chr20:35004399|35004597 hsa-miR-2861 1 0 0
chr20:35004399|35004597 hsa-miR-3154 1 0 0
chr20:35004399|35004597 hsa-miR-3196 1 0 0
chr20:35004399|35004597 hsa-miR-3197 1 0 0
chr20:35004399|35004597 hsa-miR-4298 1 0 0
chr20:35004399|35004597 hsa-miR-3916 0 1 0
chr20:35004399|35004597 hsa-miR-3937 1 1 0
chr20:35004399|35004597 hsa-miR-1268b 1 0 0
chr20:35004399|35004597 hsa-miR-4476 1 0 0
chr20:35004399|35004597 hsa-miR-4510 1 1 0
chr20:35004399|35004597 hsa-miR-4533 1 1 0
chr20:35004399|35004597 hsa-miR-4534 1 0 0
chr20:35004399|35004597 hsa-miR-4657 1 0 0
chr20:35004399|35004597 hsa-miR-4686 1 0 0
chr20:35004399|35004597 hsa-miR-4706 1 0 0
chr20:35004399|35004597 hsa-miR-4739 1 1 0
chr20:35004399|35004597 hsa-miR-4779 1 0 0
chr20:35004399|35004597 hsa-miR-5698 1 0 0
chr20:35004399|35004597 hsa-miR-6124 1 0 0
chr20:35004399|35004597 hsa-miR-6127 1 0 0
chr20:35004399|35004597 hsa-miR-6129 1 1 0
chr20:35004399|35004597 hsa-miR-6133 1 1 0
chr20:35004399|35004597 hsa-miR-7704 1 0 0
chr20:35004399|35004597 hsa-miR-8052 1 0 0
chr20:35004399|35004597 hsa-miR-8080 0 1 0
chr20:35004399|35004597 hsa-miR-8085 1 0 0
chr20:35004399|35004597 hsa-miR-12125 0 1 0
chr20:35004399|35004597 hsa-miR-6734-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6765-5p 1 1 0
chr20:35004399|35004597 hsa-miR-7106-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6894-5p 1 0 0
chr20:35004399|35004597 hsa-miR-29b-2-5p 0 1 0
chr20:35004399|35004597 hsa-miR-25-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6728-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6833-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7851-3p 0 1 0
chr20:35004399|35004597 hsa-miR-3934-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7114-5p 1 1 0
chr20:35004399|35004597 hsa-miR-6515-5p 1 0 0
chr20:35004399|35004597 hsa-miR-3192-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6880-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7847-3p 1 1 0
chr20:35004399|35004597 hsa-miR-4695-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6746-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4709-3p 1 1 0
chr20:35004399|35004597 hsa-miR-6890-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6727-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4474-3p 1 0 0
chr20:35004399|35004597 hsa-miR-6759-5p 1 0 0
chr20:35004399|35004597 hsa-miR-1178-5p 1 0 0
chr20:35004399|35004597 hsa-miR-1915-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7108-5p 1 0 0
chr20:35004399|35004597 hsa-miR-3180-3p 1 0 0
chr20:35004399|35004597 hsa-miR-6748-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6793-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6796-5p 1 0 0
chr20:35004399|35004597 hsa-miR-23a-5p 1 0 0
chr20:35004399|35004597 hsa-miR-486-3p 1 0 0
chr20:35004399|35004597 hsa-miR-4793-3p 1 0 0
chr20:35004399|35004597 hsa-miR-6786-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7109-5p 1 0 0
chr20:35004399|35004597 hsa-miR-3186-5p 1 0 0
chr20:35004399|35004597 hsa-miR-3691-5p 1 1 0
chr20:35004399|35004597 hsa-miR-885-3p 1 0 0
chr20:35004399|35004597 hsa-miR-3614-5p 0 1 0
chr20:35004399|35004597 hsa-miR-149-3p 1 0 0
chr20:35004399|35004597 hsa-miR-6781-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6877-5p 1 0 0
chr20:35004399|35004597 hsa-miR-593-3p 1 0 0
chr20:35004399|35004597 hsa-miR-1225-5p 1 0 0
chr20:35004399|35004597 hsa-miR-3681-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4750-5p 1 0 0
chr20:35004399|35004597 hsa-miR-518c-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4645-3p 0 1 0
chr20:35004399|35004597 hsa-miR-10400-5p 1 0 0
chr20:35004399|35004597 hsa-miR-1233-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4763-3p 1 1 0
chr20:35004399|35004597 hsa-miR-6769b-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6778-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6812-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6816-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6865-5p 1 1 0
chr20:35004399|35004597 hsa-miR-6870-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6893-5p 0 1 0
chr20:35004399|35004597 hsa-miR-6726-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6754-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6851-5p 1 0 0
chr20:35004399|35004597 hsa-miR-10401-5p 1 0 0
chr20:35004399|35004597 hsa-miR-11181-3p 1 0 0
chr20:35004399|35004597 hsa-miR-1249-5p 1 1 0
chr20:35004399|35004597 hsa-miR-6722-3p 0 1 0
chr20:35004399|35004597 hsa-miR-6797-5p 1 1 0
chr20:35004399|35004597 hsa-miR-6808-5p 0 1 0
chr20:35004399|35004597 hsa-miR-6875-5p 1 0 0
chr20:35004399|35004597 hsa-miR-7111-5p 1 1 0
chr20:35004399|35004597 hsa-miR-5189-5p 1 0 0
chr20:35004399|35004597 hsa-miR-5196-5p 1 0 0
chr20:35004399|35004597 hsa-miR-1237-5p 1 0 0
chr20:35004399|35004597 hsa-miR-1909-3p 1 0 0
chr20:35004399|35004597 hsa-miR-328-5p 1 1 0
chr20:35004399|35004597 hsa-miR-4632-5p 1 0 0
chr20:35004399|35004597 hsa-miR-4649-5p 1 1 0
chr20:35004399|35004597 hsa-miR-4701-3p 1 0 0
chr20:35004399|35004597 hsa-miR-4725-3p 1 1 0
chr20:35004399|35004597 hsa-miR-4745-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6729-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6795-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6858-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6731-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6856-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6736-5p 1 0 0
chr20:35004399|35004597 hsa-miR-6855-5p 1 0 0
chr20:35004399|35004597 hsa-miR-10400-3p 1 0 0
chr20:35004399|35004597 hsa-miR-6744-3p 0 1 0
chr20:35004399|35004597 hsa-miR-33b-3p 1 1 0
chr20:35004399|35004597 hsa-miR-619-5p 0 1 0
chr20:35004399|35004597 hsa-miR-892c-5p 0 1 0
chr20:35004399|35004597 hsa-miR-101-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:35004399|35004597
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence LLHPCLPPQLPRYCLNAACSPTYPRCPRRCPSSSASSTSSTCRR
Nucleotide Sequence CTGCTGCACCCCTGCCTCCCTCCACAGTTGCCGAGGTACTGTCTGAATGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCACGTGCAGACGCTGA
CircID chr20:35004399|35004597
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MPPARLHIPGAHADVLPLPPHQHHPRADADPGERPRQTHSREGRLETTSFV
Nucleotide Sequence ATGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCACGTGCAGACGCTGACCCAGGTGAGAGGCCCCGGCAGACACACAGCAGGGAAGGTCGATTGGAAACCACTTCCTTTGTC
CircID chr20:35004399|35004597
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MPPSTVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQVRGPGRHTAGKVDWKPLPL
Nucleotide Sequence CTGCCTCCCTCCACAGTTGCCGAGGTACTGTCTGAATGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCACGTGCAGACGCTGACCCAGGTGAGAGGCCCCGGCAGACACACAGCAGGGAAGGTCGATTGGAAACCACTTCCTTTG
CircID chr20:35004399|35004597
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MPGPLTWVSVCTWMMLMRRKRKDICVGTWDM
Nucleotide Sequence CTGCCGGGGCCTCTCACCTGGGTCAGCGTCTGCACGTGGATGATGTTGATGAGGCGGAAGAGGAAGGACATCTGCGTGGGCACCTGGGATATGTAG
CircID chr20:35004399|35004597
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MGQRLHVDDVDEAEEEGHLRGHLGYVGEQAAFRQYLGNCGGRQGCS
Nucleotide Sequence CTGGGTCAGCGTCTGCACGTGGATGATGTTGATGAGGCGGAAGAGGAAGGACATCTGCGTGGGCACCTGGGATATGTAGGCGAGCAGGCGGCATTCAGACAGTACCTCGGCAACTGTGGAGGGAGGCAGGGGTGCAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab