CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35284217|35284474
Strand -
CircType exon
Host Gene ENSG00000242372.5;
Algorism CIRI2;
Sequence GCGTGCACCACGGGGATGGTATCGGAGAGCTCGCCCTCGAACACACTGTAGGGACATGGACTCGGTGGTGGCGGGGCAGAGGGGCCGGCACCCTCCCACTGCCGGAGCTCTTGACTCCTGCGCACGCCTCCCCGCCACCGTAAGCCCCGGGGCTCCCGCCGCACCTGTAGAAGTTCTCTGAGCCTCCGATCGCTACCAGACAGTAGGTGTTGGTGAGCTTGGCAAAGCAGCCGATCTCACAGTTGTTCTCGAACGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35284217|35284474 hsa-miR-34a-5p 0 0 1
chr20:35284217|35284474 hsa-miR-34a-3p 0 0 1
chr20:35284217|35284474 hsa-miR-146a-5p 0 0 1
chr20:35284217|35284474 hsa-miR-146a-3p 0 0 1
chr20:35284217|35284474 hsa-miR-335-5p 0 0 1
chr20:35284217|35284474 hsa-miR-335-3p 0 0 1
chr20:35284217|35284474 hsa-miR-449a 0 0 1
chr20:35284217|35284474 hsa-miR-552-5p 0 0 1
chr20:35284217|35284474 hsa-miR-552-3p 0 0 1
chr20:35284217|35284474 hsa-miR-449b-5p 0 0 1
chr20:35284217|35284474 hsa-miR-449b-3p 0 0 1
chr20:35284217|35284474 hsa-miR-675-5p 0 0 1
chr20:35284217|35284474 hsa-miR-675-3p 0 0 1
chr20:35284217|35284474 hsa-miR-933 0 1 1
chr20:35284217|35284474 hsa-miR-1231 0 0 1
chr20:35284217|35284474 hsa-miR-139-5p 0 0 1
chr20:35284217|35284474 hsa-miR-1225-3p 0 0 1
chr20:35284217|35284474 hsa-miR-324-3p 0 0 1
chr20:35284217|35284474 hsa-miR-34c-5p 0 0 1
chr20:35284217|35284474 hsa-miR-146b-5p 0 0 1
chr20:35284217|35284474 hsa-miR-220b 0 0 1
chr20:35284217|35284474 hsa-miR-24 0 0 1
chr20:35284217|35284474 hsa-miR-663 0 0 1
chr20:35284217|35284474 hsa-miR-637 1 0 0
chr20:35284217|35284474 hsa-miR-663a 1 1 0
chr20:35284217|35284474 hsa-miR-1913 0 1 0
chr20:35284217|35284474 hsa-miR-3131 1 0 0
chr20:35284217|35284474 hsa-miR-3188 1 0 0
chr20:35284217|35284474 hsa-miR-3196 1 0 0
chr20:35284217|35284474 hsa-miR-4258 0 1 0
chr20:35284217|35284474 hsa-miR-1268b 1 0 0
chr20:35284217|35284474 hsa-miR-4449 1 0 0
chr20:35284217|35284474 hsa-miR-4466 1 0 0
chr20:35284217|35284474 hsa-miR-4467 1 0 0
chr20:35284217|35284474 hsa-miR-4488 1 1 0
chr20:35284217|35284474 hsa-miR-3960 1 1 0
chr20:35284217|35284474 hsa-miR-4656 1 0 0
chr20:35284217|35284474 hsa-miR-4706 1 1 0
chr20:35284217|35284474 hsa-miR-4721 1 0 0
chr20:35284217|35284474 hsa-miR-5787 1 0 0
chr20:35284217|35284474 hsa-miR-6090 1 0 0
chr20:35284217|35284474 hsa-miR-8072 1 0 0
chr20:35284217|35284474 hsa-miR-6765-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6825-5p 1 1 0
chr20:35284217|35284474 hsa-miR-6799-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6804-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6762-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6727-5p 1 1 0
chr20:35284217|35284474 hsa-miR-2467-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6827-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6782-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6728-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6884-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6786-5p 1 0 0
chr20:35284217|35284474 hsa-miR-5088-5p 1 0 0
chr20:35284217|35284474 hsa-miR-1909-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6784-5p 1 1 0
chr20:35284217|35284474 hsa-miR-1908-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6789-5p 1 0 0
chr20:35284217|35284474 hsa-miR-194-3p 0 1 0
chr20:35284217|35284474 hsa-miR-1237-3p 0 1 0
chr20:35284217|35284474 hsa-miR-2276-5p 0 1 0
chr20:35284217|35284474 hsa-miR-4749-3p 0 1 0
chr20:35284217|35284474 hsa-miR-10400-5p 1 1 0
chr20:35284217|35284474 hsa-miR-1207-5p 1 0 0
chr20:35284217|35284474 hsa-miR-1233-5p 1 1 0
chr20:35284217|35284474 hsa-miR-4763-3p 1 0 0
chr20:35284217|35284474 hsa-miR-6775-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6737-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6756-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6815-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6722-3p 1 0 0
chr20:35284217|35284474 hsa-miR-6779-5p 0 1 0
chr20:35284217|35284474 hsa-miR-1237-5p 1 0 0
chr20:35284217|35284474 hsa-miR-1909-3p 0 1 0
chr20:35284217|35284474 hsa-miR-328-5p 1 0 0
chr20:35284217|35284474 hsa-miR-4685-5p 1 0 0
chr20:35284217|35284474 hsa-miR-4749-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6777-5p 1 1 0
chr20:35284217|35284474 hsa-miR-6848-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6883-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6889-5p 0 1 0
chr20:35284217|35284474 hsa-miR-6885-5p 1 0 0
chr20:35284217|35284474 hsa-miR-939-5p 1 0 0
chr20:35284217|35284474 hsa-miR-10396a-3p 0 1 0
chr20:35284217|35284474 hsa-miR-10396b-3p 0 1 0
chr20:35284217|35284474 hsa-miR-1914-3p 1 0 0
chr20:35284217|35284474 hsa-miR-10398-3p 1 0 0
chr20:35284217|35284474 hsa-miR-6750-5p 1 0 0
chr20:35284217|35284474 hsa-miR-6791-5p 1 0 0
chr20:35284217|35284474 hsa-miR-4722-3p 1 0 0
chr20:35284217|35284474 hsa-miR-6511a-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6529-5p 0 1 0
chr20:35284217|35284474 hsa-miR-10392-3p 0 1 0
chr20:35284217|35284474 hsa-miR-4723-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6511b-3p 0 1 0
chr20:35284217|35284474 hsa-miR-6769b-3p 0 1 0
chr20:35284217|35284474 hsa-miR-7153-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:35284217|35284474
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRTPPRHRKPRGSRRTCRSSLSLRSLPDSRCW
Nucleotide Sequence CTGCGCACGCCTCCCCGCCACCGTAAGCCCCGGGGCTCCCGCCGCACCTGTAGAAGTTCTCTGAGCCTCCGATCGCTACCAGACAGTAGGTGTTGGTGA
CircID chr20:35284217|35284474
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MDSVVAGQRGRHPPTAGALDSCARLPATVSPGAPAAPVEVL
Nucleotide Sequence ATGGACTCGGTGGTGGCGGGGCAGAGGGGCCGGCACCCTCCCACTGCCGGAGCTCTTGACTCCTGCGCACGCCTCCCCGCCACCGTAAGCCCCGGGGCTCCCGCCGCACCTGTAGAAGTTCTCTGA
CircID chr20:35284217|35284474
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MLCQAHQHLLSGSDRRLRELLQVRREPRGLRWRGGVRRSQELRQWEGAGPSAPPPPSPCPYSVFEGELSDTIPVVH
Nucleotide Sequence CTGCTTTGCCAAGCTCACCAACACCTACTGTCTGGTAGCGATCGGAGGCTCAGAGAACTTCTACAGGTGCGGCGGGAGCCCCGGGGCTTACGGTGGCGGGGAGGCGTGCGCAGGAGTCAAGAGCTCCGGCAGTGGGAGGGTGCCGGCCCCTCTGCCCCGCCACCACCGAGTCCATGTCCCTACAGTGTGTTCGAGGGCGAGCTCTCCGATACCATCCCCGTGGTGCAC
CircID chr20:35284217|35284474
ORF Type ORF4
Protein Length 66
Nucleotide Length 198
Protein Sequence MVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCT
Nucleotide Sequence CTGGTAGCGATCGGAGGCTCAGAGAACTTCTACAGGTGCGGCGGGAGCCCCGGGGCTTACGGTGGCGGGGAGGCGTGCGCAGGAGTCAAGAGCTCCGGCAGTGGGAGGGTGCCGGCCCCTCTGCCCCGCCACCACCGAGTCCATGTCCCTACAGTGTGTTCGAGGGCGAGCTCTCCGATACCATCCCCGTGGTGCACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab