CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35479710|35479903
Strand +
CircType exon
Host Gene ENSG00000126001.14;
Algorism CIRI2;
Sequence CTCATGAGCAACTCCCATCTCAGAGGCCCTGCACCCTGCTGGAGAAGGACCTCTAATAGTCTCCCACCATCTTCCTGCCTTTCAACATCTCCATGGAATGGAGTGCATCCCATCCCAGTTGGGTTCTCACCTTGGATTACTTCCTTGGCTTGAGTGACAGTTTGAATCTGGACCTCCAGCTGCCCCTTGGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35479710|35479903 hsa-miR-198 0 0 1
chr20:35479710|35479903 hsa-miR-214-5p 0 0 1
chr20:35479710|35479903 hsa-miR-214-3p 0 0 1
chr20:35479710|35479903 hsa-miR-143-5p 0 0 1
chr20:35479710|35479903 hsa-miR-143-3p 0 0 1
chr20:35479710|35479903 hsa-miR-136-5p 0 0 1
chr20:35479710|35479903 hsa-miR-136-3p 0 0 1
chr20:35479710|35479903 hsa-miR-146a-5p 0 0 1
chr20:35479710|35479903 hsa-miR-146a-3p 0 0 1
chr20:35479710|35479903 hsa-miR-488-5p 0 0 1
chr20:35479710|35479903 hsa-miR-488-3p 0 0 1
chr20:35479710|35479903 hsa-miR-589-5p 0 0 1
chr20:35479710|35479903 hsa-miR-589-3p 0 0 1
chr20:35479710|35479903 hsa-miR-620 0 0 1
chr20:35479710|35479903 hsa-miR-653-5p 0 0 1
chr20:35479710|35479903 hsa-miR-653-3p 0 0 1
chr20:35479710|35479903 hsa-miR-668-5p 0 0 1
chr20:35479710|35479903 hsa-miR-668-3p 0 0 1
chr20:35479710|35479903 hsa-miR-766-5p 0 0 1
chr20:35479710|35479903 hsa-miR-766-3p 0 0 1
chr20:35479710|35479903 hsa-miR-541-5p 0 0 1
chr20:35479710|35479903 hsa-miR-541-3p 0 0 1
chr20:35479710|35479903 hsa-miR-877-5p 0 0 1
chr20:35479710|35479903 hsa-miR-877-3p 0 0 1
chr20:35479710|35479903 hsa-miR-940 1 0 1
chr20:35479710|35479903 hsa-miR-1178-5p 0 0 1
chr20:35479710|35479903 hsa-miR-1178-3p 0 0 1
chr20:35479710|35479903 hsa-miR-1237-5p 0 0 1
chr20:35479710|35479903 hsa-miR-1237-3p 0 0 1
chr20:35479710|35479903 hsa-miR-1248 0 0 1
chr20:35479710|35479903 hsa-miR-548g-5p 0 0 1
chr20:35479710|35479903 hsa-miR-548g-3p 0 0 1
chr20:35479710|35479903 hsa-miR-1270 1 1 1
chr20:35479710|35479903 hsa-miR-486-3p 0 1 1
chr20:35479710|35479903 hsa-miR-654-5p 0 0 1
chr20:35479710|35479903 hsa-miR-1207-3p 0 0 1
chr20:35479710|35479903 hsa-miR-338-3p 0 0 1
chr20:35479710|35479903 hsa-miR-146b-5p 0 0 1
chr20:35479710|35479903 hsa-miR-515-5p 0 0 1
chr20:35479710|35479903 hsa-miR-761 0 1 0
chr20:35479710|35479903 hsa-miR-1182 1 1 0
chr20:35479710|35479903 hsa-miR-2861 1 0 0
chr20:35479710|35479903 hsa-miR-1193 1 0 0
chr20:35479710|35479903 hsa-miR-3196 1 0 0
chr20:35479710|35479903 hsa-miR-4270 1 0 0
chr20:35479710|35479903 hsa-miR-4271 1 0 0
chr20:35479710|35479903 hsa-miR-3918 1 1 0
chr20:35479710|35479903 hsa-miR-4450 1 0 0
chr20:35479710|35479903 hsa-miR-4466 1 0 0
chr20:35479710|35479903 hsa-miR-2392 1 0 0
chr20:35479710|35479903 hsa-miR-4514 1 0 0
chr20:35479710|35479903 hsa-miR-3960 1 0 0
chr20:35479710|35479903 hsa-miR-4647 1 1 0
chr20:35479710|35479903 hsa-miR-4651 1 0 0
chr20:35479710|35479903 hsa-miR-4688 1 1 0
chr20:35479710|35479903 hsa-miR-4706 1 0 0
chr20:35479710|35479903 hsa-miR-4739 1 0 0
chr20:35479710|35479903 hsa-miR-5703 1 0 0
chr20:35479710|35479903 hsa-miR-6088 1 0 0
chr20:35479710|35479903 hsa-miR-6125 1 0 0
chr20:35479710|35479903 hsa-miR-6132 1 0 0
chr20:35479710|35479903 hsa-miR-6133 1 0 0
chr20:35479710|35479903 hsa-miR-7515 1 0 0
chr20:35479710|35479903 hsa-miR-9500 1 0 0
chr20:35479710|35479903 hsa-miR-12118 1 0 0
chr20:35479710|35479903 hsa-miR-12127 0 1 0
chr20:35479710|35479903 hsa-miR-6894-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4687-3p 1 0 0
chr20:35479710|35479903 hsa-miR-6799-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6728-5p 0 1 0
chr20:35479710|35479903 hsa-miR-6089 1 0 0
chr20:35479710|35479903 hsa-miR-6757-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6880-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4722-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6730-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6721-5p 1 0 0
chr20:35479710|35479903 hsa-miR-8069 1 0 0
chr20:35479710|35479903 hsa-miR-6772-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6829-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6732-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6760-5p 1 1 0
chr20:35479710|35479903 hsa-miR-6782-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6888-5p 1 0 0
chr20:35479710|35479903 hsa-miR-3127-5p 0 1 0
chr20:35479710|35479903 hsa-miR-149-3p 1 0 0
chr20:35479710|35479903 hsa-miR-6717-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6830-5p 0 1 0
chr20:35479710|35479903 hsa-miR-4684-3p 1 0 0
chr20:35479710|35479903 hsa-miR-6781-5p 1 0 0
chr20:35479710|35479903 hsa-miR-7113-5p 1 0 0
chr20:35479710|35479903 hsa-miR-483-5p 1 0 0
chr20:35479710|35479903 hsa-miR-1207-5p 1 1 0
chr20:35479710|35479903 hsa-miR-1233-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4763-3p 1 1 0
chr20:35479710|35479903 hsa-miR-6769b-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6778-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6812-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6816-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6893-5p 1 1 0
chr20:35479710|35479903 hsa-miR-6775-5p 1 0 0
chr20:35479710|35479903 hsa-miR-5001-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6726-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6743-5p 0 1 0
chr20:35479710|35479903 hsa-miR-6754-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6756-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6842-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6851-5p 1 0 0
chr20:35479710|35479903 hsa-miR-1249-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6722-3p 1 0 0
chr20:35479710|35479903 hsa-miR-6797-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6808-5p 1 1 0
chr20:35479710|35479903 hsa-miR-6879-5p 1 1 0
chr20:35479710|35479903 hsa-miR-6836-5p 1 1 0
chr20:35479710|35479903 hsa-miR-10396a-5p 1 0 0
chr20:35479710|35479903 hsa-miR-10396b-5p 1 0 0
chr20:35479710|35479903 hsa-miR-1909-3p 1 0 0
chr20:35479710|35479903 hsa-miR-328-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4632-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6794-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6795-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6846-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4436b-3p 1 1 0
chr20:35479710|35479903 hsa-miR-939-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4769-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6511a-5p 1 0 0
chr20:35479710|35479903 hsa-miR-3940-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6891-5p 1 0 0
chr20:35479710|35479903 hsa-miR-6791-5p 1 0 0
chr20:35479710|35479903 hsa-miR-4757-5p 0 1 0
chr20:35479710|35479903 hsa-miR-2682-5p 1 0 0
chr20:35479710|35479903 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:35479710|35479903
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MSNSHLRGPAPCWRRTSNSLPPSSCLSTSPWNGVHPIPVGFSPWITSLA
Nucleotide Sequence ATGAGCAACTCCCATCTCAGAGGCCCTGCACCCTGCTGGAGAAGGACCTCTAATAGTCTCCCACCATCTTCCTGCCTTTCAACATCTCCATGGAATGGAGTGCATCCCATCCCAGTTGGGTTCTCACCTTGGATTACTTCCTTGGCTTGA
CircID chr20:35479710|35479903
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MHPAGEGPLIVSHHLPAFQHLHGMECIPSQLGSHLGLLPWLE
Nucleotide Sequence CTGCACCCTGCTGGAGAAGGACCTCTAATAGTCTCCCACCATCTTCCTGCCTTTCAACATCTCCATGGAATGGAGTGCATCCCATCCCAGTTGGGTTCTCACCTTGGATTACTTCCTTGGCTTGAGTGA
CircID chr20:35479710|35479903
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MPFNISMEWSASHPSWVLTLDYFLGLSDSLNLDLQLPLGD
Nucleotide Sequence CTGCCTTTCAACATCTCCATGGAATGGAGTGCATCCCATCCCAGTTGGGTTCTCACCTTGGATTACTTCCTTGGCTTGAGTGACAGTTTGAATCTGGACCTCCAGCTGCCCCTTGGTGAC
CircID chr20:35479710|35479903
ORF Type ORF4
Protein Length 59
Nucleotide Length 177
Protein Sequence MEVQIQTVTQAKEVIQGENPTGMGCTPFHGDVERQEDGGRLLEVLLQQGAGPLRWELLM
Nucleotide Sequence CTGGAGGTCCAGATTCAAACTGTCACTCAAGCCAAGGAAGTAATCCAAGGTGAGAACCCAACTGGGATGGGATGCACTCCATTCCATGGAGATGTTGAAAGGCAGGAAGATGGTGGGAGACTATTAGAGGTCCTTCTCCAGCAGGGTGCAGGGCCTCTGAGATGGGAGTTGCTCATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab