CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35503416|35503668
Strand +
CircType exon
Host Gene ENSG00000126001.14;
Algorism CIRI2;
Sequence CTACCTTCCTGTGCAGGCCCTGGAGCTGCTGCTCCAGCTGGTCTTTGAGCTCCTGGAGTTCATGGATATGCTCCTGCTGACATTCCACCTCCTTCTCCTTATCACGCAGGATCAGCTTCATGTGCTCTAGGCTCCCGCGCTGTGCTTTACTTGGGCCCTTCCCTTCCTCTGCCCGTTCCTGCATCAGCTGCCTCTGAGTGGTCAGCTCCCGGCCTCGCTCTCTCAAGGACAGCTTGATCTGTTCCAGGTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35503416|35503668 hsa-miR-15a-5p 0 0 1
chr20:35503416|35503668 hsa-miR-15a-3p 0 0 1
chr20:35503416|35503668 hsa-miR-214-5p 0 0 1
chr20:35503416|35503668 hsa-miR-214-3p 0 0 1
chr20:35503416|35503668 hsa-miR-15b-5p 0 0 1
chr20:35503416|35503668 hsa-miR-15b-3p 0 0 1
chr20:35503416|35503668 hsa-miR-195-5p 0 0 1
chr20:35503416|35503668 hsa-miR-195-3p 0 0 1
chr20:35503416|35503668 hsa-miR-206 0 1 1
chr20:35503416|35503668 hsa-miR-424-5p 0 0 1
chr20:35503416|35503668 hsa-miR-424-3p 0 0 1
chr20:35503416|35503668 hsa-miR-492 0 1 1
chr20:35503416|35503668 hsa-miR-497-5p 0 0 1
chr20:35503416|35503668 hsa-miR-497-3p 0 0 1
chr20:35503416|35503668 hsa-miR-613 0 0 1
chr20:35503416|35503668 hsa-miR-619-5p 0 0 1
chr20:35503416|35503668 hsa-miR-619-3p 0 0 1
chr20:35503416|35503668 hsa-miR-631 0 1 1
chr20:35503416|35503668 hsa-miR-646 0 0 1
chr20:35503416|35503668 hsa-miR-708-5p 0 0 1
chr20:35503416|35503668 hsa-miR-708-3p 0 0 1
chr20:35503416|35503668 hsa-miR-665 0 1 1
chr20:35503416|35503668 hsa-miR-873-5p 0 0 1
chr20:35503416|35503668 hsa-miR-873-3p 0 0 1
chr20:35503416|35503668 hsa-miR-920 0 1 1
chr20:35503416|35503668 hsa-miR-922 0 0 1
chr20:35503416|35503668 hsa-miR-1286 0 0 1
chr20:35503416|35503668 hsa-miR-1827 0 0 1
chr20:35503416|35503668 hsa-miR-127-5p 0 0 1
chr20:35503416|35503668 hsa-miR-508-5p 0 1 1
chr20:35503416|35503668 hsa-miR-28-5p 0 1 1
chr20:35503416|35503668 hsa-miR-1207-3p 0 0 1
chr20:35503416|35503668 hsa-miR-16 0 0 1
chr20:35503416|35503668 hsa-miR-1 0 0 1
chr20:35503416|35503668 hsa-miR-663a 1 0 0
chr20:35503416|35503668 hsa-miR-762 1 0 0
chr20:35503416|35503668 hsa-miR-765 1 0 0
chr20:35503416|35503668 hsa-miR-1321 0 1 0
chr20:35503416|35503668 hsa-miR-3132 1 0 0
chr20:35503416|35503668 hsa-miR-3139 0 1 0
chr20:35503416|35503668 hsa-miR-3154 1 0 0
chr20:35503416|35503668 hsa-miR-3193 0 1 0
chr20:35503416|35503668 hsa-miR-4298 1 0 0
chr20:35503416|35503668 hsa-miR-4300 0 1 0
chr20:35503416|35503668 hsa-miR-3661 0 1 0
chr20:35503416|35503668 hsa-miR-3916 0 1 0
chr20:35503416|35503668 hsa-miR-3918 0 1 0
chr20:35503416|35503668 hsa-miR-3945 1 0 0
chr20:35503416|35503668 hsa-miR-4428 0 1 0
chr20:35503416|35503668 hsa-miR-3135b 0 1 0
chr20:35503416|35503668 hsa-miR-4479 1 0 0
chr20:35503416|35503668 hsa-miR-4512 0 1 0
chr20:35503416|35503668 hsa-miR-4656 1 0 0
chr20:35503416|35503668 hsa-miR-4689 1 0 0
chr20:35503416|35503668 hsa-miR-4739 1 0 0
chr20:35503416|35503668 hsa-miR-5787 1 0 0
chr20:35503416|35503668 hsa-miR-6081 0 1 0
chr20:35503416|35503668 hsa-miR-6090 1 0 0
chr20:35503416|35503668 hsa-miR-6127 1 0 0
chr20:35503416|35503668 hsa-miR-6133 1 1 0
chr20:35503416|35503668 hsa-miR-7515 0 1 0
chr20:35503416|35503668 hsa-miR-8060 0 1 0
chr20:35503416|35503668 hsa-miR-8075 0 1 0
chr20:35503416|35503668 hsa-miR-12114 0 1 0
chr20:35503416|35503668 hsa-miR-12118 1 0 0
chr20:35503416|35503668 hsa-miR-12120 1 0 0
chr20:35503416|35503668 hsa-miR-135a-3p 1 0 0
chr20:35503416|35503668 hsa-miR-4433b-3p 1 0 0
chr20:35503416|35503668 hsa-miR-6765-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6894-5p 1 0 0
chr20:35503416|35503668 hsa-miR-5187-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6089 1 1 0
chr20:35503416|35503668 hsa-miR-6746-5p 1 0 0
chr20:35503416|35503668 hsa-miR-197-5p 1 0 0
chr20:35503416|35503668 hsa-miR-7108-5p 1 0 0
chr20:35503416|35503668 hsa-miR-1292-5p 1 0 0
chr20:35503416|35503668 hsa-miR-3180-3p 1 0 0
chr20:35503416|35503668 hsa-miR-6827-5p 0 1 0
chr20:35503416|35503668 hsa-miR-6760-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6881-5p 1 0 0
chr20:35503416|35503668 hsa-miR-2467-3p 1 1 0
chr20:35503416|35503668 hsa-miR-5088-5p 1 1 0
chr20:35503416|35503668 hsa-miR-4640-5p 1 0 0
chr20:35503416|35503668 hsa-miR-92b-5p 1 0 0
chr20:35503416|35503668 hsa-miR-4732-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6749-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6847-5p 1 1 0
chr20:35503416|35503668 hsa-miR-3202 0 1 0
chr20:35503416|35503668 hsa-miR-4743-5p 1 0 0
chr20:35503416|35503668 hsa-miR-3160-3p 0 1 0
chr20:35503416|35503668 hsa-miR-149-3p 1 0 0
chr20:35503416|35503668 hsa-miR-3162-5p 1 1 0
chr20:35503416|35503668 hsa-miR-7112-5p 1 1 0
chr20:35503416|35503668 hsa-miR-7160-3p 0 1 0
chr20:35503416|35503668 hsa-miR-584-3p 0 1 0
chr20:35503416|35503668 hsa-miR-1288-5p 0 1 0
chr20:35503416|35503668 hsa-miR-744-5p 1 0 0
chr20:35503416|35503668 hsa-miR-2277-5p 0 1 0
chr20:35503416|35503668 hsa-miR-1207-5p 1 0 0
chr20:35503416|35503668 hsa-miR-1233-5p 1 1 0
chr20:35503416|35503668 hsa-miR-4763-3p 1 0 0
chr20:35503416|35503668 hsa-miR-6726-5p 0 1 0
chr20:35503416|35503668 hsa-miR-6743-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6756-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6851-5p 0 1 0
chr20:35503416|35503668 hsa-miR-11181-3p 1 0 0
chr20:35503416|35503668 hsa-miR-1249-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6722-3p 1 0 0
chr20:35503416|35503668 hsa-miR-6779-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6780a-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6788-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6797-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6808-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6879-5p 1 0 0
chr20:35503416|35503668 hsa-miR-7111-5p 1 0 0
chr20:35503416|35503668 hsa-miR-4728-5p 1 0 0
chr20:35503416|35503668 hsa-miR-5196-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6780b-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6836-5p 1 0 0
chr20:35503416|35503668 hsa-miR-10396a-5p 1 0 0
chr20:35503416|35503668 hsa-miR-10396b-5p 1 0 0
chr20:35503416|35503668 hsa-miR-1909-3p 1 0 0
chr20:35503416|35503668 hsa-miR-4649-5p 1 0 0
chr20:35503416|35503668 hsa-miR-4685-5p 1 1 0
chr20:35503416|35503668 hsa-miR-4725-3p 1 0 0
chr20:35503416|35503668 hsa-miR-4726-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6729-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6735-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6858-5p 1 0 0
chr20:35503416|35503668 hsa-miR-6831-5p 0 1 0
chr20:35503416|35503668 hsa-miR-939-5p 1 1 0
chr20:35503416|35503668 hsa-miR-4758-5p 1 0 0
chr20:35503416|35503668 hsa-miR-3116 0 1 0
chr20:35503416|35503668 hsa-miR-4747-5p 0 1 0
chr20:35503416|35503668 hsa-miR-6876-5p 0 1 0
chr20:35503416|35503668 hsa-miR-6891-5p 1 1 0
chr20:35503416|35503668 hsa-miR-3689d 0 1 0
chr20:35503416|35503668 hsa-miR-320a-3p 0 1 0
chr20:35503416|35503668 hsa-miR-320b 0 1 0
chr20:35503416|35503668 hsa-miR-6837-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6859-5p 1 1 0
chr20:35503416|35503668 hsa-miR-6500-5p 0 1 0
chr20:35503416|35503668 hsa-miR-6838-5p 0 1 0
chr20:35503416|35503668 hsa-miR-1-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:35503416|35503668
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MGPSLPLPVPASAASEWSAPGLALSRTA
Nucleotide Sequence TTGGGCCCTTCCCTTCCTCTGCCCGTTCCTGCATCAGCTGCCTCTGAGTGGTCAGCTCCCGGCCTCGCTCTCTCAAGGACAGCTTGA
CircID chr20:35503416|35503668
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MELLLQLVFELLEFMDMLLLTFHLLLLITQDQLHVL
Nucleotide Sequence CTGGAGCTGCTGCTCCAGCTGGTCTTTGAGCTCCTGGAGTTCATGGATATGCTCCTGCTGACATTCCACCTCCTTCTCCTTATCACGCAGGATCAGCTTCATGTGCTCTAG
CircID chr20:35503416|35503668
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MCFTWALPFLCPFLHQLPLSGQLPASLSQGQLDLFQVL
Nucleotide Sequence CTGTGCTTTACTTGGGCCCTTCCCTTCCTCTGCCCGTTCCTGCATCAGCTGCCTCTGAGTGGTCAGCTCCCGGCCTCGCTCTCTCAAGGACAGCTTGATCTGTTCCAGGTCCTC
CircID chr20:35503416|35503668
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MCSRLPRCALLGPFPSSARSCISCL
Nucleotide Sequence ATGTGCTCTAGGCTCCCGCGCTGTGCTTTACTTGGGCCCTTCCCTTCCTCTGCCCGTTCCTGCATCAGCTGCCTCTGA
CircID chr20:35503416|35503668
ORF Type ORF5
Protein Length 82
Nucleotide Length 246
Protein Sequence MEQIKLSLRERGRELTTQRQLMQERAEEGKGPSKAQRGSLEHMKLILRDKEKEVECQQEHIHELQELKDQLEQQLQGLHRKV
Nucleotide Sequence CTGGAACAGATCAAGCTGTCCTTGAGAGAGCGAGGCCGGGAGCTGACCACTCAGAGGCAGCTGATGCAGGAACGGGCAGAGGAAGGGAAGGGCCCAAGTAAAGCACAGCGCGGGAGCCTAGAGCACATGAAGCTGATCCTGCGTGATAAGGAGAAGGAGGTGGAATGTCAGCAGGAGCATATCCATGAACTCCAGGAGCTCAAAGACCAGCTGGAGCAGCAGCTCCAGGGCCTGCACAGGAAGGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab