CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35508943|35510054
Strand +
CircType exon
Host Gene ENSG00000126001.15;
Algorism find_circ;CIRI2;CIRC
Sequence GTGGAGCGAGAACGGAGGAAGCTGAAGAGGGAGGCCATGCGTGCGGCCCAGGCAGGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAGGATGGGAGAGGACAGAAGAACTCAGATGCCAAGTGTGTGGCTGAACTGCAGAAAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35508943|35510054 hsa-miR-412-5p 0 0 1
chr20:35508943|35510054 hsa-miR-412-3p 0 0 1
chr20:35508943|35510054 hsa-miR-545-5p 0 0 1
chr20:35508943|35510054 hsa-miR-545-3p 0 0 1
chr20:35508943|35510054 hsa-miR-922 0 0 1
chr20:35508943|35510054 hsa-miR-940 1 1 1
chr20:35508943|35510054 hsa-miR-1321 0 1 1
chr20:35508943|35510054 hsa-miR-17-3p 0 1 1
chr20:35508943|35510054 hsa-miR-132-5p 0 1 1
chr20:35508943|35510054 hsa-miR-1207-5p 0 0 1
chr20:35508943|35510054 hsa-miR-184 1 1 0
chr20:35508943|35510054 hsa-miR-663a 1 0 0
chr20:35508943|35510054 hsa-miR-658 1 0 0
chr20:35508943|35510054 hsa-miR-663b 1 0 0
chr20:35508943|35510054 hsa-miR-1538 1 0 0
chr20:35508943|35510054 hsa-miR-3125 1 1 0
chr20:35508943|35510054 hsa-miR-3131 1 0 0
chr20:35508943|35510054 hsa-miR-4673 0 1 0
chr20:35508943|35510054 hsa-miR-4692 0 1 0
chr20:35508943|35510054 hsa-miR-4739 1 1 0
chr20:35508943|35510054 hsa-miR-6075 1 1 0
chr20:35508943|35510054 hsa-miR-6127 1 0 0
chr20:35508943|35510054 hsa-miR-4747-3p 1 0 0
chr20:35508943|35510054 hsa-miR-15a-3p 0 1 0
chr20:35508943|35510054 hsa-miR-4726-3p 1 0 0
chr20:35508943|35510054 hsa-miR-671-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6894-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6089 1 0 0
chr20:35508943|35510054 hsa-miR-6880-5p 1 0 0
chr20:35508943|35510054 hsa-miR-4695-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6746-5p 1 0 0
chr20:35508943|35510054 hsa-miR-4709-3p 0 1 0
chr20:35508943|35510054 hsa-miR-7108-5p 1 0 0
chr20:35508943|35510054 hsa-miR-1292-5p 1 0 0
chr20:35508943|35510054 hsa-miR-23a-5p 0 1 0
chr20:35508943|35510054 hsa-miR-6821-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6815-3p 0 1 0
chr20:35508943|35510054 hsa-miR-149-3p 1 0 0
chr20:35508943|35510054 hsa-miR-3922-5p 0 1 0
chr20:35508943|35510054 hsa-miR-4708-3p 0 1 0
chr20:35508943|35510054 hsa-miR-4778-3p 0 1 0
chr20:35508943|35510054 hsa-miR-6869-3p 1 0 0
chr20:35508943|35510054 hsa-miR-4717-5p 0 1 0
chr20:35508943|35510054 hsa-miR-1233-5p 1 0 0
chr20:35508943|35510054 hsa-miR-4763-3p 1 1 0
chr20:35508943|35510054 hsa-miR-6787-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6726-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6851-5p 1 0 0
chr20:35508943|35510054 hsa-miR-11181-3p 1 0 0
chr20:35508943|35510054 hsa-miR-1249-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6797-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6808-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6780b-5p 1 0 0
chr20:35508943|35510054 hsa-miR-328-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6729-5p 1 0 0
chr20:35508943|35510054 hsa-miR-6858-5p 1 0 0
chr20:35508943|35510054 hsa-miR-3173-3p 1 0 0
chr20:35508943|35510054 hsa-miR-6762-5p 0 1 0
chr20:35508943|35510054 hsa-miR-6529-5p 0 1 0
chr20:35508943|35510054 hsa-miR-103a-1-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:35508943|35510054
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MRAAQAGSLEISKATASSPTQQDGRGQKNSDAKCVAELQKE
Nucleotide Sequence ATGCGTGCGGCCCAGGCAGGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAGGATGGGAGAGGACAGAAGAACTCAGATGCCAAGTGTGTGGCTGAACTGCAGAAAGAG
CircID chr20:35508943|35510054
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MKREAMRAAQAGSLEISKATASSPTQQKE
Nucleotide Sequence CTGAAGAGGGAGGCCATGCGTGCGGCCCAGGCAGGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAGAAAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr20:35508943|35510054 UCHL5 1 5 0
chr20:35508943|35510054 U2AF2 9 19 0
chr20:35508943|35510054 MOV10 1 1 0
chr20:35508943|35510054 ELAVL1 19 6 1
chr20:35508943|35510054 SF3B4 4 0 0
chr20:35508943|35510054 SF3B1 1 2 0
chr20:35508943|35510054 CELF2 2 0 0
chr20:35508943|35510054 CNBP 1 0 0
chr20:35508943|35510054 ZNF622 2 4 0
chr20:35508943|35510054 FMR1 2 0 0
chr20:35508943|35510054 CPSF6 9 4 0
chr20:35508943|35510054 NUDT21 2 1 0
chr20:35508943|35510054 CPSF4 1 0 0
chr20:35508943|35510054 RBM15B 1 0 0
chr20:35508943|35510054 CPSF1 1 0 0
chr20:35508943|35510054 FUS 2 0 0
chr20:35508943|35510054 CPSF7 1 1 0
chr20:35508943|35510054 GPKOW 0 2 0
chr20:35508943|35510054 SRSF1 5 3 1
chr20:35508943|35510054 NOP58 1 0 1
chr20:35508943|35510054 CSTF2 3 5 0
chr20:35508943|35510054 NONO 1 0 0
chr20:35508943|35510054 KHSRP 1 0 0
chr20:35508943|35510054 SRSF9 1 0 0
chr20:35508943|35510054 DDX54 2 0 2
chr20:35508943|35510054 LSM11 1 0 0
chr20:35508943|35510054 EFTUD2 1 0 0
chr20:35508943|35510054 GRWD1 5 2 0
chr20:35508943|35510054 HNRNPK 0 1 0
chr20:35508943|35510054 HNRNPM 1 0 0
chr20:35508943|35510054 RBM15 1 0 0
chr20:35508943|35510054 SF3A3 1 0 1
chr20:35508943|35510054 FIP1L1 2 2 0
chr20:35508943|35510054 PTBP1 4 1 0
chr20:35508943|35510054 HNRNPC 48 48 5
chr20:35508943|35510054 HNRNPD 1 0 0
chr20:35508943|35510054 TRA2A 1 4 0
chr20:35508943|35510054 HNRNPA2B1 0 2 0
chr20:35508943|35510054 ZNF184 1 0 0
chr20:35508943|35510054 LARP4 0 1 0
chr20:35508943|35510054 TIAL1 0 1 0
chr20:35508943|35510054 SMNDC1 1 0 0
chr20:35508943|35510054 TBRG4 0 1 0
chr20:35508943|35510054 HNRNPA1 4 2 0
chr20:35508943|35510054 LIN28B 11 0 0
chr20:35508943|35510054 BCCIP 1 0 1
chr20:35508943|35510054 AGO2 0 1 0
chr20:35508943|35510054 IGF2BP1 1 0 0
chr20:35508943|35510054 BUD13 1 0 0
chr20:35508943|35510054 IGF2BP3 1 0 0
chr20:35508943|35510054 IGF2BP2 2 1 0
chr20:35508943|35510054 TARDBP 3 2 0
chr20:35508943|35510054 GTF2F1 1 0 0
chr20:35508943|35510054 RBFOX2 1 2 0
chr20:35508943|35510054 PRPF8 4 3 0
chr20:35508943|35510054 SLTM 1 0 0
chr20:35508943|35510054 CSTF2T 2 2 0
chr20:35508943|35510054 RBPMS 1 0 0
chr20:35508943|35510054 VIM 0 0 1
chr20:35508943|35510054 DDX3X 0 2 0
chr20:35508943|35510054 U2AF1 1 0 0
chr20:35508943|35510054 RBM22 1 0 0
chr20:35508943|35510054 ILF3 0 1 0
chr20:35508943|35510054 WDR33 0 1 0
chr20:35508943|35510054 TIA1 0 2 0
chr20:35508943|35510054 AIFM1 1 0 0
chr20:35508943|35510054 ATXN2 2 0 0
chr20:35508943|35510054 EIF4A3 4 4 4
chr20:35508943|35510054 FBL 2 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab