CircRNA Information

General Information
circRNA Basic Information
CircID chr20:35564507|35564755
Strand -
CircType exon
Host Gene ENSG00000088340.14;
Algorism CIRI2;
Sequence CTGGGAGACAGAGCGAGACTGTTTCATAAAAAAAGAAAGCGGTCAAGTGACATTCGTTACAGGATCCCGACTCCCAAGCCCAAGTCTTGACCACTGAGCTATGTCTTGGTTGGCAGTGGCGGTGGGTGGGAGGGTCCCCTTCCATGAAATCATAGGATCTGGAGAACACAAAAGGGAATGTGAGCTTGAATGTGTTTGGCCAGAAACTCAGAATGGCTCCTGTGGGCCCTGCTGGACCCACACTTCATA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:35564507|35564755 hsa-miR-23a-5p 0 0 1
chr20:35564507|35564755 hsa-miR-23a-3p 0 0 1
chr20:35564507|35564755 hsa-miR-181c-5p 0 0 1
chr20:35564507|35564755 hsa-miR-181c-3p 0 0 1
chr20:35564507|35564755 hsa-miR-204-5p 0 0 1
chr20:35564507|35564755 hsa-miR-204-3p 0 0 1
chr20:35564507|35564755 hsa-miR-211-5p 0 0 1
chr20:35564507|35564755 hsa-miR-211-3p 0 0 1
chr20:35564507|35564755 hsa-miR-212-5p 0 0 1
chr20:35564507|35564755 hsa-miR-212-3p 0 0 1
chr20:35564507|35564755 hsa-miR-214-5p 0 0 1
chr20:35564507|35564755 hsa-miR-214-3p 0 0 1
chr20:35564507|35564755 hsa-miR-23b-5p 0 0 1
chr20:35564507|35564755 hsa-miR-23b-3p 0 0 1
chr20:35564507|35564755 hsa-miR-132-5p 0 0 1
chr20:35564507|35564755 hsa-miR-132-3p 0 0 1
chr20:35564507|35564755 hsa-miR-150-5p 0 0 1
chr20:35564507|35564755 hsa-miR-150-3p 0 0 1
chr20:35564507|35564755 hsa-miR-494-5p 0 0 1
chr20:35564507|35564755 hsa-miR-494-3p 0 0 1
chr20:35564507|35564755 hsa-miR-181d-5p 0 0 1
chr20:35564507|35564755 hsa-miR-181d-3p 0 0 1
chr20:35564507|35564755 hsa-miR-498-5p 0 0 1
chr20:35564507|35564755 hsa-miR-498-3p 0 0 1
chr20:35564507|35564755 hsa-miR-573 0 0 1
chr20:35564507|35564755 hsa-miR-595 0 0 1
chr20:35564507|35564755 hsa-miR-599 0 0 1
chr20:35564507|35564755 hsa-miR-623 0 0 1
chr20:35564507|35564755 hsa-miR-635 0 0 1
chr20:35564507|35564755 hsa-miR-641 0 1 1
chr20:35564507|35564755 hsa-miR-668-5p 0 0 1
chr20:35564507|35564755 hsa-miR-668-3p 0 0 1
chr20:35564507|35564755 hsa-miR-766-5p 0 0 1
chr20:35564507|35564755 hsa-miR-766-3p 0 0 1
chr20:35564507|35564755 hsa-miR-486-5p 0 0 1
chr20:35564507|35564755 hsa-miR-532-3p 0 0 1
chr20:35564507|35564755 hsa-miR-1224-3p 0 0 1
chr20:35564507|35564755 hsa-miR-490-5p 0 0 1
chr20:35564507|35564755 hsa-miR-338-3p 0 0 1
chr20:35564507|35564755 hsa-miR-515-5p 0 0 1
chr20:35564507|35564755 hsa-miR-1260 0 0 1
chr20:35564507|35564755 hsa-miR-1280 0 0 1
chr20:35564507|35564755 hsa-miR-181a 0 0 1
chr20:35564507|35564755 hsa-miR-181b 0 0 1
chr20:35564507|35564755 hsa-miR-720 0 0 1
chr20:35564507|35564755 hsa-miR-581 1 1 0
chr20:35564507|35564755 hsa-miR-638 1 0 0
chr20:35564507|35564755 hsa-miR-1260a 0 1 0
chr20:35564507|35564755 hsa-miR-1260b 0 1 0
chr20:35564507|35564755 hsa-miR-4252 0 1 0
chr20:35564507|35564755 hsa-miR-3918 0 1 0
chr20:35564507|35564755 hsa-miR-4466 1 0 0
chr20:35564507|35564755 hsa-miR-4530 0 1 0
chr20:35564507|35564755 hsa-miR-4682 0 1 0
chr20:35564507|35564755 hsa-miR-7705 0 1 0
chr20:35564507|35564755 hsa-miR-5010-3p 0 1 0
chr20:35564507|35564755 hsa-miR-3190-5p 0 1 0
chr20:35564507|35564755 hsa-miR-3180-5p 1 0 0
chr20:35564507|35564755 hsa-miR-1288-5p 1 0 0
chr20:35564507|35564755 hsa-miR-5189-3p 0 1 0
chr20:35564507|35564755 hsa-miR-3184-3p 0 1 0
chr20:35564507|35564755 hsa-miR-1229-3p 0 1 0
chr20:35564507|35564755 hsa-miR-6774-5p 1 1 0
chr20:35564507|35564755 hsa-miR-6836-5p 1 1 0
chr20:35564507|35564755 hsa-miR-10396a-5p 1 0 0
chr20:35564507|35564755 hsa-miR-3085-5p 1 0 0
chr20:35564507|35564755 hsa-miR-324-3p 0 1 0
chr20:35564507|35564755 hsa-miR-6790-5p 1 0 0
chr20:35564507|35564755 hsa-miR-6718-5p 0 1 0
chr20:35564507|35564755 hsa-miR-3619-5p 0 1 0
chr20:35564507|35564755 hsa-miR-3617-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:35564507|35564755
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LGDRARLFHKKRKRSSDIRYRIPTPKPKS
Nucleotide Sequence CTGGGAGACAGAGCGAGACTGTTTCATAAAAAAAGAAAGCGGTCAAGTGACATTCGTTACAGGATCCCGACTCCCAAGCCCAAGTCTTGA
CircID chr20:35564507|35564755
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MSWLAVAVGGRVPFHEIIGSGEHKRECELECVWPETQNGSCGPCWTHTS
Nucleotide Sequence ATGTCTTGGTTGGCAGTGGCGGTGGGTGGGAGGGTCCCCTTCCATGAAATCATAGGATCTGGAGAACACAAAAGGGAATGTGAGCTTGAATGTGTTTGGCCAGAAACTCAGAATGGCTCCTGTGGGCCCTGCTGGACCCACACTTCA
CircID chr20:35564507|35564755
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MENTKGNVSLNVFGQKLRMAPVGPAGPTLH
Nucleotide Sequence CTGGAGAACACAAAAGGGAATGTGAGCTTGAATGTGTTTGGCCAGAAACTCAGAATGGCTCCTGTGGGCCCTGCTGGACCCACACTTCAT
CircID chr20:35564507|35564755
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MCSPDPMISWKGTLPPTATANQDIAQWSRLGLGSRDPVTNVT
Nucleotide Sequence TTGTGTTCTCCAGATCCTATGATTTCATGGAAGGGGACCCTCCCACCCACCGCCACTGCCAACCAAGACATAGCTCAGTGGTCAAGACTTGGGCTTGGGAGTCGGGATCCTGTAACGAATGTCACTTGA
CircID chr20:35564507|35564755
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MKCGSSRAHRSHSEFLAKHIQAHIPFCVLQIL
Nucleotide Sequence ATGAAGTGTGGGTCCAGCAGGGCCCACAGGAGCCATTCTGAGTTTCTGGCCAAACACATTCAAGCTCACATTCCCTTTTGTGTTCTCCAGATCCTATGA
CircID chr20:35564507|35564755
ORF Type ORF6
Protein Length 70
Nucleotide Length 210
Protein Sequence MSFWPNTFKLTFPFVFSRSYDFMEGDPPTHRHCQPRHSSVVKTWAWESGSCNECHLTAFFFYETVSLCLP
Nucleotide Sequence CTGAGTTTCTGGCCAAACACATTCAAGCTCACATTCCCTTTTGTGTTCTCCAGATCCTATGATTTCATGGAAGGGGACCCTCCCACCCACCGCCACTGCCAACCAAGACATAGCTCAGTGGTCAAGACTTGGGCTTGGGAGTCGGGATCCTGTAACGAATGTCACTTGACCGCTTTCTTTTTTTATGAAACAGTCTCGCTCTGTCTCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab