CircRNA Information

General Information
circRNA Basic Information
CircID chr20:36175558|36175715
Strand +
CircType exon
Host Gene ENSG00000088367.19;
Algorism CIRI2;
Sequence CTCCACCTCACACTCATACTCCGAGGCATCAAGCAGAGTGACCCGGCAGATGGCACTCTTGTATTTCTTGGCAATCTTCTGGGGCGATTTCTGGGCCTTGCTGGGCGTGGTCCTCTCCGAAAGGCCATCGGCCTCACTGTAGTCCTTCTCCTCCATGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:36175558|36175715 hsa-miR-381-5p 0 0 1
chr20:36175558|36175715 hsa-miR-381-3p 0 0 1
chr20:36175558|36175715 hsa-miR-668-5p 0 0 1
chr20:36175558|36175715 hsa-miR-668-3p 0 0 1
chr20:36175558|36175715 hsa-miR-765 1 1 1
chr20:36175558|36175715 hsa-miR-300 0 0 1
chr20:36175558|36175715 hsa-miR-1294 0 0 1
chr20:36175558|36175715 hsa-miR-139-5p 0 0 1
chr20:36175558|36175715 hsa-miR-574-5p 0 1 1
chr20:36175558|36175715 hsa-miR-3131 1 0 0
chr20:36175558|36175715 hsa-miR-3175 1 0 0
chr20:36175558|36175715 hsa-miR-3917 1 0 0
chr20:36175558|36175715 hsa-miR-3929 1 0 0
chr20:36175558|36175715 hsa-miR-4516 1 0 0
chr20:36175558|36175715 hsa-miR-4534 1 0 0
chr20:36175558|36175715 hsa-miR-4658 0 1 0
chr20:36175558|36175715 hsa-miR-4686 0 1 0
chr20:36175558|36175715 hsa-miR-4689 1 0 0
chr20:36175558|36175715 hsa-miR-4739 1 0 0
chr20:36175558|36175715 hsa-miR-4751 0 1 0
chr20:36175558|36175715 hsa-miR-5698 1 0 0
chr20:36175558|36175715 hsa-miR-7706 1 0 0
chr20:36175558|36175715 hsa-miR-8085 1 0 0
chr20:36175558|36175715 hsa-miR-12114 1 0 0
chr20:36175558|36175715 hsa-miR-12118 1 0 0
chr20:36175558|36175715 hsa-miR-4747-3p 1 0 0
chr20:36175558|36175715 hsa-miR-6734-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6840-3p 1 0 0
chr20:36175558|36175715 hsa-miR-6765-5p 1 0 0
chr20:36175558|36175715 hsa-miR-7106-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6894-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6089 1 1 0
chr20:36175558|36175715 hsa-miR-6873-5p 0 1 0
chr20:36175558|36175715 hsa-miR-6880-5p 1 0 0
chr20:36175558|36175715 hsa-miR-7847-3p 1 0 0
chr20:36175558|36175715 hsa-miR-6746-5p 1 0 0
chr20:36175558|36175715 hsa-miR-3189-5p 1 0 0
chr20:36175558|36175715 hsa-miR-432-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6514-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6821-5p 1 0 0
chr20:36175558|36175715 hsa-miR-1909-5p 0 1 0
chr20:36175558|36175715 hsa-miR-2277-3p 1 0 0
chr20:36175558|36175715 hsa-miR-4783-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6786-3p 1 0 0
chr20:36175558|36175715 hsa-miR-3922-5p 0 1 0
chr20:36175558|36175715 hsa-miR-4708-3p 0 1 0
chr20:36175558|36175715 hsa-miR-493-3p 1 0 0
chr20:36175558|36175715 hsa-miR-5699-5p 1 0 0
chr20:36175558|36175715 hsa-miR-4699-5p 0 1 0
chr20:36175558|36175715 hsa-miR-6870-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6775-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6743-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6803-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6851-5p 1 0 0
chr20:36175558|36175715 hsa-miR-11181-3p 1 1 0
chr20:36175558|36175715 hsa-miR-6751-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6797-5p 1 0 0
chr20:36175558|36175715 hsa-miR-7111-5p 1 0 0
chr20:36175558|36175715 hsa-miR-4728-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6780b-5p 1 0 0
chr20:36175558|36175715 hsa-miR-4725-3p 1 0 0
chr20:36175558|36175715 hsa-miR-4726-5p 1 0 0
chr20:36175558|36175715 hsa-miR-4745-5p 1 0 0
chr20:36175558|36175715 hsa-miR-3085-5p 1 0 0
chr20:36175558|36175715 hsa-miR-10396a-3p 1 0 0
chr20:36175558|36175715 hsa-miR-10396b-3p 1 0 0
chr20:36175558|36175715 hsa-miR-3173-3p 1 0 0
chr20:36175558|36175715 hsa-miR-4747-5p 1 0 0
chr20:36175558|36175715 hsa-miR-6790-5p 0 1 0
chr20:36175558|36175715 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr20:36175558|36175715
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MGRFLGLAGRGPLRKAIGLTVVLLLH
Nucleotide Sequence CTGGGGCGATTTCTGGGCCTTGCTGGGCGTGGTCCTCTCCGAAAGGCCATCGGCCTCACTGTAGTCCTTCTCCTCCAT

CircID chr20:36175558|36175715
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MALLYFLAIFWGDFWALLGVVLSERPSASL
Nucleotide Sequence ATGGCACTCTTGTATTTCTTGGCAATCTTCTGGGGCGATTTCTGGGCCTTGCTGGGCGTGGTCCTCTCCGAAAGGCCATCGGCCTCACTGTAG

CircID chr20:36175558|36175715
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MAFRRGPRPARPRNRPRRLPRNTRVPSAGSLCLMPRSMSVRW
Nucleotide Sequence ATGGCCTTTCGGAGAGGACCACGCCCAGCAAGGCCCAGAAATCGCCCCAGAAGATTGCCAAGAAATACAAGAGTGCCATCTGCCGGGTCACTCTGCTTGATGCCTCGGAGTATGAGTGTGAGGTGG

CircID chr20:36175558|36175715
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MEEKDYSEADGLSERTTPSKAQKSPQKIAKKYKSAICRVTLLDASEYECEVE
Nucleotide Sequence ATGGAGGAGAAGGACTACAGTGAGGCCGATGGCCTTTCGGAGAGGACCACGCCCAGCAAGGCCCAGAAATCGCCCCAGAAGATTGCCAAGAAATACAAGAGTGCCATCTGCCGGGTCACTCTGCTTGATGCCTCGGAGTATGAGTGTGAGGTGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites