CircRNA Information

General Information
circRNA Basic Information
CircID chr20:36783031|36783176
Strand +
CircType exon
Host Gene ENSG00000149639.13;
Algorism CIRI2;
Sequence CTCTAGGTGTCCCCAGGTGCACTCTTCTACCGGTTGGCTTCCGATGTGACAAGGCCAAGGGCCCAAAGACTTGACCCTCTTACACCCTTGCTGACATGGTTCCATCATGTCCACCCGCATGCACTTTTATGGTTTCATCACCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:36783031|36783176 hsa-miR-17-5p 0 0 1
chr20:36783031|36783176 hsa-miR-17-3p 0 0 1
chr20:36783031|36783176 hsa-miR-20a-5p 0 0 1
chr20:36783031|36783176 hsa-miR-20a-3p 0 0 1
chr20:36783031|36783176 hsa-miR-93-5p 0 0 1
chr20:36783031|36783176 hsa-miR-93-3p 0 0 1
chr20:36783031|36783176 hsa-miR-106a-5p 0 0 1
chr20:36783031|36783176 hsa-miR-106a-3p 0 0 1
chr20:36783031|36783176 hsa-miR-106b-5p 0 0 1
chr20:36783031|36783176 hsa-miR-106b-3p 0 0 1
chr20:36783031|36783176 hsa-miR-20b-5p 0 0 1
chr20:36783031|36783176 hsa-miR-20b-3p 0 0 1
chr20:36783031|36783176 hsa-miR-519d-5p 0 0 1
chr20:36783031|36783176 hsa-miR-519d-3p 0 0 1
chr20:36783031|36783176 hsa-miR-545-5p 0 0 1
chr20:36783031|36783176 hsa-miR-545-3p 0 0 1
chr20:36783031|36783176 hsa-miR-1264 0 0 1
chr20:36783031|36783176 hsa-miR-1262 0 0 1
chr20:36783031|36783176 hsa-miR-548n 0 0 1
chr20:36783031|36783176 hsa-miR-671-5p 1 1 1
chr20:36783031|36783176 hsa-miR-296-5p 0 0 1
chr20:36783031|36783176 hsa-miR-519b-3p 0 0 1
chr20:36783031|36783176 hsa-miR-519c-3p 0 0 1
chr20:36783031|36783176 hsa-miR-9 0 0 1
chr20:36783031|36783176 hsa-miR-886-3p 0 0 1
chr20:36783031|36783176 hsa-miR-519a 0 0 1
chr20:36783031|36783176 hsa-miR-608 1 0 0
chr20:36783031|36783176 hsa-miR-3138 1 0 0
chr20:36783031|36783176 hsa-miR-3610 1 0 0
chr20:36783031|36783176 hsa-miR-3689f 1 0 0
chr20:36783031|36783176 hsa-miR-4525 1 0 0
chr20:36783031|36783176 hsa-miR-6088 1 0 0
chr20:36783031|36783176 hsa-miR-6745 1 1 0
chr20:36783031|36783176 hsa-miR-8089 0 1 0
chr20:36783031|36783176 hsa-miR-12122 1 0 0
chr20:36783031|36783176 hsa-miR-6861-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6510-5p 1 1 0
chr20:36783031|36783176 hsa-miR-8071 0 1 0
chr20:36783031|36783176 hsa-miR-7851-3p 0 1 0
chr20:36783031|36783176 hsa-miR-6741-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6776-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6748-5p 0 1 0
chr20:36783031|36783176 hsa-miR-6772-5p 0 1 0
chr20:36783031|36783176 hsa-miR-6827-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6782-5p 1 0 0
chr20:36783031|36783176 hsa-miR-4786-3p 1 0 0
chr20:36783031|36783176 hsa-miR-4650-3p 0 1 0
chr20:36783031|36783176 hsa-miR-5189-3p 0 1 0
chr20:36783031|36783176 hsa-miR-7159-5p 1 1 0
chr20:36783031|36783176 hsa-miR-500a-3p 0 1 0
chr20:36783031|36783176 hsa-miR-6778-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6812-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6756-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6722-3p 1 0 0
chr20:36783031|36783176 hsa-miR-5196-5p 1 0 0
chr20:36783031|36783176 hsa-miR-328-5p 1 0 0
chr20:36783031|36783176 hsa-miR-4701-3p 1 1 0
chr20:36783031|36783176 hsa-miR-6795-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6887-5p 1 0 0
chr20:36783031|36783176 hsa-miR-6736-5p 1 1 0
chr20:36783031|36783176 hsa-miR-363-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:36783031|36783176
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MASDVTRPRAQRLDPLTPLLTWFHHVHPHALLWFHHP
Nucleotide Sequence TTGGCTTCCGATGTGACAAGGCCAAGGGCCCAAAGACTTGACCCTCTTACACCCTTGCTGACATGGTTCCATCATGTCCACCCGCATGCACTTTTATGGTTTCATCACCCA
CircID chr20:36783031|36783176
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MRVDMMEPCQQGCKRVKSLGPWPCHIGSQPVEECTWGHLE
Nucleotide Sequence ATGCGGGTGGACATGATGGAACCATGTCAGCAAGGGTGTAAGAGGGTCAAGTCTTTGGGCCCTTGGCCTTGTCACATCGGAAGCCAACCGGTAGAAGAGTGCACCTGGGGACACCTAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab