CircRNA Information

General Information
circRNA Basic Information
CircID chr20:37301245|37316340
Strand +
CircType exon
Host Gene ENSG00000101363.11;
Algorism CIRI2;
Sequence CTCAGCACTTCTGGGCTCAGACGGTTCAGCCTCCGCCTCGTGGGACTTGGGAATGGGTACGATGATGGCCAGCACACAGATGAGCTGGAAGATGGCTCCCAGGAAGAGTCCGTACCGTAGCAGGTTCTCCAGGAAAGTGGGCTCGGGCACCTCCGGAGGTGAGAAGTCTAGGTCAGAGGCCATGGCCCAAGTCGCTTGCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:37301245|37316340 hsa-miR-192-5p 0 0 1
chr20:37301245|37316340 hsa-miR-192-3p 0 0 1
chr20:37301245|37316340 hsa-miR-215-5p 0 0 1
chr20:37301245|37316340 hsa-miR-215-3p 0 0 1
chr20:37301245|37316340 hsa-miR-126-5p 0 0 1
chr20:37301245|37316340 hsa-miR-126-3p 0 0 1
chr20:37301245|37316340 hsa-miR-302a-5p 0 0 1
chr20:37301245|37316340 hsa-miR-302a-3p 0 0 1
chr20:37301245|37316340 hsa-miR-302b-5p 0 0 1
chr20:37301245|37316340 hsa-miR-302b-3p 0 0 1
chr20:37301245|37316340 hsa-miR-302c-5p 0 0 1
chr20:37301245|37316340 hsa-miR-302c-3p 0 0 1
chr20:37301245|37316340 hsa-miR-302d-5p 0 0 1
chr20:37301245|37316340 hsa-miR-302d-3p 0 0 1
chr20:37301245|37316340 hsa-miR-372-5p 0 0 1
chr20:37301245|37316340 hsa-miR-372-3p 0 0 1
chr20:37301245|37316340 hsa-miR-373-5p 0 0 1
chr20:37301245|37316340 hsa-miR-373-3p 0 0 1
chr20:37301245|37316340 hsa-miR-520e-5p 0 0 1
chr20:37301245|37316340 hsa-miR-520e-3p 0 0 1
chr20:37301245|37316340 hsa-miR-520b-5p 0 0 1
chr20:37301245|37316340 hsa-miR-520b-3p 0 0 1
chr20:37301245|37316340 hsa-miR-487b-5p 0 0 1
chr20:37301245|37316340 hsa-miR-487b-3p 0 0 1
chr20:37301245|37316340 hsa-miR-589-5p 0 0 1
chr20:37301245|37316340 hsa-miR-589-3p 0 0 1
chr20:37301245|37316340 hsa-miR-635 0 0 1
chr20:37301245|37316340 hsa-miR-662 0 0 1
chr20:37301245|37316340 hsa-miR-658 0 0 1
chr20:37301245|37316340 hsa-miR-660-5p 0 0 1
chr20:37301245|37316340 hsa-miR-660-3p 0 0 1
chr20:37301245|37316340 hsa-miR-920 0 0 1
chr20:37301245|37316340 hsa-miR-1229-5p 0 0 1
chr20:37301245|37316340 hsa-miR-1229-3p 0 0 1
chr20:37301245|37316340 hsa-miR-1236-5p 0 0 1
chr20:37301245|37316340 hsa-miR-1236-3p 0 0 1
chr20:37301245|37316340 hsa-miR-1203 0 0 1
chr20:37301245|37316340 hsa-miR-302e 0 0 1
chr20:37301245|37316340 hsa-miR-1225-3p 0 0 1
chr20:37301245|37316340 hsa-miR-512-3p 0 0 1
chr20:37301245|37316340 hsa-miR-615-3p 0 0 1
chr20:37301245|37316340 hsa-miR-485-5p 0 0 1
chr20:37301245|37316340 hsa-miR-520d-3p 0 0 1
chr20:37301245|37316340 hsa-miR-520a-3p 0 0 1
chr20:37301245|37316340 hsa-miR-520c-3p 0 0 1
chr20:37301245|37316340 hsa-miR-1233 0 0 1
chr20:37301245|37316340 hsa-miR-637 1 0 0
chr20:37301245|37316340 hsa-miR-665 1 0 0
chr20:37301245|37316340 hsa-miR-3197 1 0 0
chr20:37301245|37316340 hsa-miR-4449 1 0 0
chr20:37301245|37316340 hsa-miR-4539 1 0 0
chr20:37301245|37316340 hsa-miR-141-5p 1 0 0
chr20:37301245|37316340 hsa-miR-370-3p 1 0 0
chr20:37301245|37316340 hsa-miR-4726-3p 1 0 0
chr20:37301245|37316340 hsa-miR-6765-5p 1 0 0
chr20:37301245|37316340 hsa-miR-6894-5p 1 0 0
chr20:37301245|37316340 hsa-miR-3180-3p 1 0 0
chr20:37301245|37316340 hsa-miR-619-3p 1 0 0
chr20:37301245|37316340 hsa-miR-4746-5p 1 0 0
chr20:37301245|37316340 hsa-miR-2277-5p 1 0 0
chr20:37301245|37316340 hsa-miR-10400-5p 1 0 0
chr20:37301245|37316340 hsa-miR-4763-3p 1 0 0
chr20:37301245|37316340 hsa-miR-6787-5p 1 0 0
chr20:37301245|37316340 hsa-miR-1915-3p 1 0 0
chr20:37301245|37316340 hsa-miR-1237-5p 1 0 0
chr20:37301245|37316340 hsa-miR-4726-5p 1 0 0
chr20:37301245|37316340 hsa-miR-6848-5p 1 0 0
chr20:37301245|37316340 hsa-miR-10398-3p 1 0 0
chr20:37301245|37316340 hsa-miR-4757-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:37301245|37316340
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MGSDGSASASWDLGMGTMMASTQMSWKMAPRKSPYRSRFSRKVGSGTSGGEKSRSEAMAQVACC
Nucleotide Sequence CTGGGCTCAGACGGTTCAGCCTCCGCCTCGTGGGACTTGGGAATGGGTACGATGATGGCCAGCACACAGATGAGCTGGAAGATGGCTCCCAGGAAGAGTCCGTACCGTAGCAGGTTCTCCAGGAAAGTGGGCTCGGGCACCTCCGGAGGTGAGAAGTCTAGGTCAGAGGCCATGGCCCAAGTCGCTTGCTGC
CircID chr20:37301245|37316340
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MASDLDFSPPEVPEPTFLENLLRYGLFLGAIFQLICVLAIIVPIPKSHEAEAEPSEPRSAE
Nucleotide Sequence ATGGCCTCTGACCTAGACTTCTCACCTCCGGAGGTGCCCGAGCCCACTTTCCTGGAGAACCTGCTACGGTACGGACTCTTCCTGGGAGCCATCTTCCAGCTCATCTGTGTGCTGGCCATCATCGTACCCATTCCCAAGTCCCACGAGGCGGAGGCTGAACCGTCTGAGCCCAGAAGTGCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab