CircRNA Information

General Information
circRNA Basic Information
CircID chr20:37316826|37317006
Strand -
CircType exon
Host Gene ENSG00000101363.11;
Algorism CIRI2;
Sequence AGATCTCCTCCTGATCAGTCACCTTTGTTGCTGCTGTGTAGACAGAGCCAGGCCTCACCTGTTTGTTTAGGCCAAGATGCCATGGACATGCAGCGTTAGTGATCCCACTAGCTGTGACAGCCAGGCCCAGAAAATGCCTGGCGTGAGAGCCAGCAGACAGCCAGGCCAGGGTAGGCAGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:37316826|37317006 hsa-miR-15a-5p 0 0 1
chr20:37316826|37317006 hsa-miR-15a-3p 0 0 1
chr20:37316826|37317006 hsa-miR-10a-5p 0 0 1
chr20:37316826|37317006 hsa-miR-10a-3p 0 0 1
chr20:37316826|37317006 hsa-miR-10b-5p 0 0 1
chr20:37316826|37317006 hsa-miR-10b-3p 0 0 1
chr20:37316826|37317006 hsa-miR-15b-5p 0 0 1
chr20:37316826|37317006 hsa-miR-15b-3p 0 0 1
chr20:37316826|37317006 hsa-miR-134-5p 0 0 1
chr20:37316826|37317006 hsa-miR-134-3p 0 0 1
chr20:37316826|37317006 hsa-miR-149-5p 0 0 1
chr20:37316826|37317006 hsa-miR-149-3p 0 0 1
chr20:37316826|37317006 hsa-miR-195-5p 0 0 1
chr20:37316826|37317006 hsa-miR-195-3p 0 0 1
chr20:37316826|37317006 hsa-miR-383-5p 0 0 1
chr20:37316826|37317006 hsa-miR-383-3p 0 0 1
chr20:37316826|37317006 hsa-miR-346 0 0 1
chr20:37316826|37317006 hsa-miR-424-5p 0 0 1
chr20:37316826|37317006 hsa-miR-424-3p 0 0 1
chr20:37316826|37317006 hsa-miR-495-5p 0 0 1
chr20:37316826|37317006 hsa-miR-495-3p 0 0 1
chr20:37316826|37317006 hsa-miR-497-5p 0 0 1
chr20:37316826|37317006 hsa-miR-497-3p 0 0 1
chr20:37316826|37317006 hsa-miR-552-5p 0 0 1
chr20:37316826|37317006 hsa-miR-552-3p 0 0 1
chr20:37316826|37317006 hsa-miR-612 0 0 1
chr20:37316826|37317006 hsa-miR-626 0 0 1
chr20:37316826|37317006 hsa-miR-632 0 0 1
chr20:37316826|37317006 hsa-miR-638 1 0 1
chr20:37316826|37317006 hsa-miR-765 0 0 1
chr20:37316826|37317006 hsa-miR-760 0 0 1
chr20:37316826|37317006 hsa-miR-934 0 0 1
chr20:37316826|37317006 hsa-miR-125a-3p 0 1 1
chr20:37316826|37317006 hsa-miR-34c-3p 0 0 1
chr20:37316826|37317006 hsa-miR-769-3p 1 0 1
chr20:37316826|37317006 hsa-miR-450b-3p 0 1 1
chr20:37316826|37317006 hsa-miR-16 0 0 1
chr20:37316826|37317006 hsa-miR-1285 0 0 1
chr20:37316826|37317006 hsa-miR-596 1 0 0
chr20:37316826|37317006 hsa-miR-661 1 0 0
chr20:37316826|37317006 hsa-miR-2861 1 1 0
chr20:37316826|37317006 hsa-miR-3176 0 1 0
chr20:37316826|37317006 hsa-miR-4288 0 1 0
chr20:37316826|37317006 hsa-miR-4439 0 1 0
chr20:37316826|37317006 hsa-miR-4507 1 0 0
chr20:37316826|37317006 hsa-miR-1587 1 0 0
chr20:37316826|37317006 hsa-miR-4642 0 1 0
chr20:37316826|37317006 hsa-miR-4654 0 1 0
chr20:37316826|37317006 hsa-miR-4672 0 1 0
chr20:37316826|37317006 hsa-miR-4710 0 1 0
chr20:37316826|37317006 hsa-miR-8057 0 1 0
chr20:37316826|37317006 hsa-miR-12122 0 1 0
chr20:37316826|37317006 hsa-miR-12125 0 1 0
chr20:37316826|37317006 hsa-miR-6836-3p 1 0 0
chr20:37316826|37317006 hsa-miR-6089 1 0 0
chr20:37316826|37317006 hsa-miR-3064-5p 0 1 0
chr20:37316826|37317006 hsa-miR-4474-3p 1 0 0
chr20:37316826|37317006 hsa-miR-1915-5p 1 0 0
chr20:37316826|37317006 hsa-miR-6735-3p 1 0 0
chr20:37316826|37317006 hsa-miR-6882-3p 1 1 0
chr20:37316826|37317006 hsa-miR-4763-5p 1 0 0
chr20:37316826|37317006 hsa-miR-4640-5p 1 0 0
chr20:37316826|37317006 hsa-miR-7113-3p 1 0 0
chr20:37316826|37317006 hsa-miR-4690-5p 1 0 0
chr20:37316826|37317006 hsa-miR-6800-5p 1 0 0
chr20:37316826|37317006 hsa-miR-3065-5p 0 1 0
chr20:37316826|37317006 hsa-miR-6813-3p 1 0 0
chr20:37316826|37317006 hsa-miR-4727-3p 0 1 0
chr20:37316826|37317006 hsa-miR-4649-3p 0 1 0
chr20:37316826|37317006 hsa-miR-3912-5p 0 1 0
chr20:37316826|37317006 hsa-miR-654-3p 0 1 0
chr20:37316826|37317006 hsa-miR-6890-3p 0 1 0
chr20:37316826|37317006 hsa-miR-6769b-5p 1 0 0
chr20:37316826|37317006 hsa-miR-6865-5p 1 0 0
chr20:37316826|37317006 hsa-miR-6815-5p 1 0 0
chr20:37316826|37317006 hsa-miR-3620-5p 1 0 0
chr20:37316826|37317006 hsa-miR-4745-3p 1 0 0
chr20:37316826|37317006 hsa-miR-1271-3p 1 0 0
chr20:37316826|37317006 hsa-miR-6791-5p 1 0 0
chr20:37316826|37317006 hsa-miR-6753-3p 1 0 0
chr20:37316826|37317006 hsa-miR-3085-3p 0 1 0
chr20:37316826|37317006 hsa-miR-330-5p 0 1 0
chr20:37316826|37317006 hsa-miR-6876-3p 0 1 0
chr20:37316826|37317006 hsa-miR-6504-5p 0 1 0
chr20:37316826|37317006 hsa-miR-3136-5p 0 1 0
chr20:37316826|37317006 hsa-miR-3922-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:37316826|37317006
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MPWTCSVSDPTSCDSQAQKMPGVRASRQPGQGRQC
Nucleotide Sequence ATGCCATGGACATGCAGCGTTAGTGATCCCACTAGCTGTGACAGCCAGGCCCAGAAAATGCCTGGCGTGAGAGCCAGCAGACAGCCAGGCCAGGGTAGGCAGTGC
CircID chr20:37316826|37317006
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MFRPRCHGHAALVIPLAVTARPRKCLA
Nucleotide Sequence TTGTTTAGGCCAAGATGCCATGGACATGCAGCGTTAGTGATCCCACTAGCTGTGACAGCCAGGCCCAGAAAATGCCTGGCGTGA
CircID chr20:37316826|37317006
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MPTLAWLSAGSHARHFLGLAVTASGITNAACPWHLGLNKQVRPGSVYTAATKVTDQEEI
Nucleotide Sequence CTGCCTACCCTGGCCTGGCTGTCTGCTGGCTCTCACGCCAGGCATTTTCTGGGCCTGGCTGTCACAGCTAGTGGGATCACTAACGCTGCATGTCCATGGCATCTTGGCCTAAACAAACAGGTGAGGCCTGGCTCTGTCTACACAGCAGCAACAAAGGTGACTGATCAGGAGGAGATC
CircID chr20:37316826|37317006
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MLALTPGIFWAWLSQLVGSLTLHVHGILA
Nucleotide Sequence CTGCTGGCTCTCACGCCAGGCATTTTCTGGGCCTGGCTGTCACAGCTAGTGGGATCACTAACGCTGCATGTCCATGGCATCTTGGCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab