CircRNA Information

General Information
circRNA Basic Information
CircID chr20:3784498|3784612
Strand +
CircType exon
Host Gene ENSG00000125817.7;
Algorism CIRI2;
Sequence CCGCTGTGCATGGAGCCAGAGTGCAGAGCCCCAGATCCTTTAGTAATGCTTCCCCTGGTCCTGCAACAGGCCCGGTCACCTCGGCCGGGCCCGGGGCTGAGGTCAGCCTCACTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:3784498|3784612 hsa-miR-149-5p 0 0 1
chr20:3784498|3784612 hsa-miR-149-3p 0 0 1
chr20:3784498|3784612 hsa-miR-637 0 0 1
chr20:3784498|3784612 hsa-miR-760 0 1 1
chr20:3784498|3784612 hsa-miR-1286 1 1 1
chr20:3784498|3784612 hsa-miR-485-5p 0 1 1
chr20:3784498|3784612 hsa-miR-1538 1 0 0
chr20:3784498|3784612 hsa-miR-2861 0 1 0
chr20:3784498|3784612 hsa-miR-3196 1 0 0
chr20:3784498|3784612 hsa-miR-4271 1 0 0
chr20:3784498|3784612 hsa-miR-3929 0 1 0
chr20:3784498|3784612 hsa-miR-4449 0 1 0
chr20:3784498|3784612 hsa-miR-4466 1 0 0
chr20:3784498|3784612 hsa-miR-4478 0 1 0
chr20:3784498|3784612 hsa-miR-4525 1 0 0
chr20:3784498|3784612 hsa-miR-4688 1 0 0
chr20:3784498|3784612 hsa-miR-6132 1 0 0
chr20:3784498|3784612 hsa-miR-7703 0 1 0
chr20:3784498|3784612 hsa-miR-3194-3p 0 1 0
chr20:3784498|3784612 hsa-miR-671-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4722-5p 1 0 0
chr20:3784498|3784612 hsa-miR-7160-5p 0 1 0
chr20:3784498|3784612 hsa-miR-4655-5p 1 0 0
chr20:3784498|3784612 hsa-miR-7845-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6732-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6798-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6782-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4793-3p 0 1 0
chr20:3784498|3784612 hsa-miR-4640-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6753-5p 1 1 0
chr20:3784498|3784612 hsa-miR-6516-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6749-5p 0 1 0
chr20:3784498|3784612 hsa-miR-7854-3p 0 1 0
chr20:3784498|3784612 hsa-miR-6824-5p 1 0 0
chr20:3784498|3784612 hsa-miR-194-3p 0 1 0
chr20:3784498|3784612 hsa-miR-4776-5p 1 0 0
chr20:3784498|3784612 hsa-miR-1298-3p 0 1 0
chr20:3784498|3784612 hsa-miR-4763-3p 1 0 0
chr20:3784498|3784612 hsa-miR-6870-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6726-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6743-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6780b-5p 0 1 0
chr20:3784498|3784612 hsa-miR-6836-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4649-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4685-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4726-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4745-3p 0 1 0
chr20:3784498|3784612 hsa-miR-6794-5p 1 0 0
chr20:3784498|3784612 hsa-miR-939-5p 1 0 0
chr20:3784498|3784612 hsa-miR-6511b-5p 1 0 0
chr20:3784498|3784612 hsa-miR-10396a-3p 1 1 0
chr20:3784498|3784612 hsa-miR-10396b-3p 0 1 0
chr20:3784498|3784612 hsa-miR-6837-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4756-5p 1 0 0
chr20:3784498|3784612 hsa-miR-4509 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:3784498|3784612
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MCMEPECRAPDPLVMLPLVLQQARSPRPGPGLRSASL
Nucleotide Sequence CTGTGCATGGAGCCAGAGTGCAGAGCCCCAGATCCTTTAGTAATGCTTCCCCTGGTCCTGCAACAGGCCCGGTCACCTCGGCCGGGCCCGGGGCTGAGGTCAGCCTCACTG
CircID chr20:3784498|3784612
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MTSAPGPAEVTGPVAGPGEALLKDLGLCTLAPCTA
Nucleotide Sequence CTGACCTCAGCCCCGGGCCCGGCCGAGGTGACCGGGCCTGTTGCAGGACCAGGGGAAGCATTACTAAAGGATCTGGGGCTCTGCACTCTGGCTCCATGCACAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab