CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38006268|38006382
Strand -
CircType exon
Host Gene ENSG00000101407.11;
Algorism CIRI2;
Sequence TGTTCGATGTCTTCAGCTGTGGTGGTGCTCTTCTCAAGAGCTGCTGGTCTTTGGTTCAAATGACTTCCCTCTTCTCCTAAACTTTGCTCTTGGAGGTGCCCAAGATTACCTGTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38006268|38006382 hsa-miR-29a-5p 0 0 1
chr20:38006268|38006382 hsa-miR-29a-3p 0 0 1
chr20:38006268|38006382 hsa-miR-29c-5p 0 0 1
chr20:38006268|38006382 hsa-miR-29c-3p 0 0 1
chr20:38006268|38006382 hsa-miR-335-5p 0 0 1
chr20:38006268|38006382 hsa-miR-335-3p 0 0 1
chr20:38006268|38006382 hsa-miR-526b-5p 0 0 1
chr20:38006268|38006382 hsa-miR-526b-3p 0 0 1
chr20:38006268|38006382 hsa-miR-561-5p 0 0 1
chr20:38006268|38006382 hsa-miR-561-3p 0 0 1
chr20:38006268|38006382 hsa-miR-579-5p 0 0 1
chr20:38006268|38006382 hsa-miR-579-3p 0 0 1
chr20:38006268|38006382 hsa-miR-580-5p 0 0 1
chr20:38006268|38006382 hsa-miR-580-3p 0 0 1
chr20:38006268|38006382 hsa-miR-634 0 0 1
chr20:38006268|38006382 hsa-miR-635 0 1 1
chr20:38006268|38006382 hsa-miR-641 0 0 1
chr20:38006268|38006382 hsa-miR-646 0 0 1
chr20:38006268|38006382 hsa-miR-651-5p 0 0 1
chr20:38006268|38006382 hsa-miR-651-3p 0 0 1
chr20:38006268|38006382 hsa-miR-1253 1 1 1
chr20:38006268|38006382 hsa-miR-140-3p 0 0 1
chr20:38006268|38006382 hsa-miR-220b 0 0 1
chr20:38006268|38006382 hsa-miR-1300 0 0 1
chr20:38006268|38006382 hsa-miR-29b 0 0 1
chr20:38006268|38006382 hsa-miR-658 1 0 0
chr20:38006268|38006382 hsa-miR-765 1 1 0
chr20:38006268|38006382 hsa-miR-3122 1 0 0
chr20:38006268|38006382 hsa-miR-4253 1 0 0
chr20:38006268|38006382 hsa-miR-4277 0 1 0
chr20:38006268|38006382 hsa-miR-4660 0 1 0
chr20:38006268|38006382 hsa-miR-4739 1 0 0
chr20:38006268|38006382 hsa-miR-5703 1 1 0
chr20:38006268|38006382 hsa-miR-12118 1 0 0
chr20:38006268|38006382 hsa-miR-4433b-3p 1 0 0
chr20:38006268|38006382 hsa-miR-6734-5p 1 0 0
chr20:38006268|38006382 hsa-miR-3663-3p 1 1 0
chr20:38006268|38006382 hsa-miR-6746-5p 1 0 0
chr20:38006268|38006382 hsa-miR-4709-3p 1 0 0
chr20:38006268|38006382 hsa-miR-6768-5p 0 1 0
chr20:38006268|38006382 hsa-miR-6798-5p 1 0 0
chr20:38006268|38006382 hsa-miR-3126-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6760-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6740-5p 1 1 0
chr20:38006268|38006382 hsa-miR-185-5p 1 0 0
chr20:38006268|38006382 hsa-miR-767-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6824-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6886-5p 1 0 0
chr20:38006268|38006382 hsa-miR-5197-3p 0 1 0
chr20:38006268|38006382 hsa-miR-1911-5p 1 1 0
chr20:38006268|38006382 hsa-miR-1233-5p 1 0 0
chr20:38006268|38006382 hsa-miR-1273h-5p 1 0 0
chr20:38006268|38006382 hsa-miR-11181-3p 1 0 0
chr20:38006268|38006382 hsa-miR-1249-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6788-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6797-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6875-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6780b-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6777-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6858-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6889-5p 1 0 0
chr20:38006268|38006382 hsa-miR-6876-5p 1 0 0
chr20:38006268|38006382 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:38006268|38006382
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MWWCSSQELLVFGSNDFPLLLNFALGGAQDYLC
Nucleotide Sequence CTGTGGTGGTGCTCTTCTCAAGAGCTGCTGGTCTTTGGTTCAAATGACTTCCCTCTTCTCCTAAACTTTGCTCTTGGAGGTGCCCAAGATTACCTGTGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab