CircRNA Information

General Information
circRNA Basic Information
CircID chr20:3804627|3804984
Strand -
CircType exon
Host Gene ENSG00000101224.16;
Algorism CIRI2;
Sequence CCTGAGATGTATATCCTGAAAGGCGGCTACAAGGAGTTCTTCCCTCAGCACCCGGTAGCGTGGGTGGGGAAGGCCACAGTCTCTGTGTGAGGGTTGGCTTGGCCAGGCTGGAGCCATGGGATGGGGGGTGGGAGGGTTGGGTCCCTGCCAAACTTACCCATTCCACTGCATTGACCCCTCCTGTCCTGCCCTAGAACTTCTGTGAACCCCAGGACTACCGGCCCATGAACCACGAGGCCTTCAAGGATGAGCTAAAGACCTTCCGCCTCAAGACTCGCAGCTGGGCTGGGGAGCGGAGCCGGCGGGAGCTCTGTAGCCGGCTGCAGGACCAGTGAGGGGCCTGCGCCAGTCCTGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:3804627|3804984 hsa-miR-27a-5p 0 0 1
chr20:3804627|3804984 hsa-miR-27a-3p 0 0 1
chr20:3804627|3804984 hsa-miR-96-5p 0 0 1
chr20:3804627|3804984 hsa-miR-96-3p 0 0 1
chr20:3804627|3804984 hsa-miR-182-5p 0 0 1
chr20:3804627|3804984 hsa-miR-182-3p 0 0 1
chr20:3804627|3804984 hsa-miR-27b-5p 0 0 1
chr20:3804627|3804984 hsa-miR-27b-3p 0 0 1
chr20:3804627|3804984 hsa-miR-206 0 0 1
chr20:3804627|3804984 hsa-miR-377-5p 0 0 1
chr20:3804627|3804984 hsa-miR-377-3p 0 0 1
chr20:3804627|3804984 hsa-miR-493-5p 0 0 1
chr20:3804627|3804984 hsa-miR-493-3p 0 0 1
chr20:3804627|3804984 hsa-miR-526b-5p 0 0 1
chr20:3804627|3804984 hsa-miR-526b-3p 0 0 1
chr20:3804627|3804984 hsa-miR-555 0 0 1
chr20:3804627|3804984 hsa-miR-572 0 0 1
chr20:3804627|3804984 hsa-miR-613 0 0 1
chr20:3804627|3804984 hsa-miR-1271-5p 0 0 1
chr20:3804627|3804984 hsa-miR-1271-3p 0 0 1
chr20:3804627|3804984 hsa-miR-766-5p 0 0 1
chr20:3804627|3804984 hsa-miR-766-3p 0 0 1
chr20:3804627|3804984 hsa-miR-924 0 0 1
chr20:3804627|3804984 hsa-miR-663b 0 0 1
chr20:3804627|3804984 hsa-miR-1206 0 0 1
chr20:3804627|3804984 hsa-miR-1286 0 0 1
chr20:3804627|3804984 hsa-miR-1304-5p 0 0 1
chr20:3804627|3804984 hsa-miR-1304-3p 0 0 1
chr20:3804627|3804984 hsa-miR-1266-5p 0 0 1
chr20:3804627|3804984 hsa-miR-1266-3p 0 0 1
chr20:3804627|3804984 hsa-miR-532-3p 0 1 1
chr20:3804627|3804984 hsa-miR-1184 0 1 1
chr20:3804627|3804984 hsa-miR-1224-3p 0 1 1
chr20:3804627|3804984 hsa-miR-513a-5p 0 0 1
chr20:3804627|3804984 hsa-miR-1207-5p 1 0 1
chr20:3804627|3804984 hsa-miR-362-5p 0 1 1
chr20:3804627|3804984 hsa-miR-342-3p 0 1 1
chr20:3804627|3804984 hsa-miR-1260 0 0 1
chr20:3804627|3804984 hsa-miR-1280 0 0 1
chr20:3804627|3804984 hsa-miR-1308 0 0 1
chr20:3804627|3804984 hsa-miR-1 0 0 1
chr20:3804627|3804984 hsa-miR-638 1 0 0
chr20:3804627|3804984 hsa-miR-658 1 0 0
chr20:3804627|3804984 hsa-miR-762 1 0 0
chr20:3804627|3804984 hsa-miR-940 1 0 0
chr20:3804627|3804984 hsa-miR-943 0 1 0
chr20:3804627|3804984 hsa-miR-1260a 0 1 0
chr20:3804627|3804984 hsa-miR-2861 1 0 0
chr20:3804627|3804984 hsa-miR-3141 1 0 0
chr20:3804627|3804984 hsa-miR-1260b 0 1 0
chr20:3804627|3804984 hsa-miR-3170 0 1 0
chr20:3804627|3804984 hsa-miR-3196 1 0 0
chr20:3804627|3804984 hsa-miR-3197 1 0 0
chr20:3804627|3804984 hsa-miR-4298 1 0 0
chr20:3804627|3804984 hsa-miR-4281 1 0 0
chr20:3804627|3804984 hsa-miR-4436a 1 1 0
chr20:3804627|3804984 hsa-miR-4511 0 1 0
chr20:3804627|3804984 hsa-miR-4515 1 0 0
chr20:3804627|3804984 hsa-miR-4688 1 0 0
chr20:3804627|3804984 hsa-miR-4767 1 0 0
chr20:3804627|3804984 hsa-miR-4794 1 0 0
chr20:3804627|3804984 hsa-miR-5090 1 0 0
chr20:3804627|3804984 hsa-miR-5194 1 1 0
chr20:3804627|3804984 hsa-miR-5572 1 0 0
chr20:3804627|3804984 hsa-miR-5685 0 1 0
chr20:3804627|3804984 hsa-miR-6068 1 1 0
chr20:3804627|3804984 hsa-miR-6126 0 1 0
chr20:3804627|3804984 hsa-miR-6132 1 0 0
chr20:3804627|3804984 hsa-miR-6165 0 1 0
chr20:3804627|3804984 hsa-miR-8089 1 0 0
chr20:3804627|3804984 hsa-miR-12115 1 0 0
chr20:3804627|3804984 hsa-miR-4435 1 1 0
chr20:3804627|3804984 hsa-miR-4433b-3p 1 0 0
chr20:3804627|3804984 hsa-miR-6734-5p 0 1 0
chr20:3804627|3804984 hsa-miR-323a-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4433a-3p 1 0 0
chr20:3804627|3804984 hsa-miR-6765-5p 1 0 0
chr20:3804627|3804984 hsa-miR-149-5p 0 1 0
chr20:3804627|3804984 hsa-miR-6822-3p 1 0 0
chr20:3804627|3804984 hsa-miR-6720-5p 0 1 0
chr20:3804627|3804984 hsa-miR-6799-5p 1 0 0
chr20:3804627|3804984 hsa-miR-8071 1 0 0
chr20:3804627|3804984 hsa-miR-1225-3p 1 0 0
chr20:3804627|3804984 hsa-miR-1301-3p 1 0 0
chr20:3804627|3804984 hsa-miR-593-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6741-5p 1 1 0
chr20:3804627|3804984 hsa-miR-3189-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6849-3p 0 1 0
chr20:3804627|3804984 hsa-miR-7845-5p 1 0 0
chr20:3804627|3804984 hsa-miR-7108-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6716-5p 1 0 0
chr20:3804627|3804984 hsa-miR-3180-3p 1 0 0
chr20:3804627|3804984 hsa-miR-23a-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6798-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6858-3p 1 0 0
chr20:3804627|3804984 hsa-miR-1343-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6852-5p 1 1 0
chr20:3804627|3804984 hsa-miR-1226-5p 1 0 0
chr20:3804627|3804984 hsa-miR-1229-5p 1 1 0
chr20:3804627|3804984 hsa-miR-193b-5p 1 0 0
chr20:3804627|3804984 hsa-miR-1228-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4756-3p 0 1 0
chr20:3804627|3804984 hsa-miR-4743-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4446-3p 1 0 0
chr20:3804627|3804984 hsa-miR-149-3p 1 0 0
chr20:3804627|3804984 hsa-miR-6824-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4640-3p 0 1 0
chr20:3804627|3804984 hsa-miR-7156-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6781-5p 1 1 0
chr20:3804627|3804984 hsa-miR-7112-5p 1 0 0
chr20:3804627|3804984 hsa-miR-3190-5p 0 1 0
chr20:3804627|3804984 hsa-miR-7152-3p 1 1 0
chr20:3804627|3804984 hsa-miR-4707-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4687-5p 0 1 0
chr20:3804627|3804984 hsa-miR-873-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6741-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6886-3p 0 1 0
chr20:3804627|3804984 hsa-miR-5189-3p 0 1 0
chr20:3804627|3804984 hsa-miR-4749-3p 0 1 0
chr20:3804627|3804984 hsa-miR-2277-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4433a-5p 0 1 0
chr20:3804627|3804984 hsa-miR-6798-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6734-3p 0 1 0
chr20:3804627|3804984 hsa-miR-10400-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4763-3p 1 0 0
chr20:3804627|3804984 hsa-miR-6787-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6812-5p 1 0 0
chr20:3804627|3804984 hsa-miR-5001-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6743-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6819-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6774-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6779-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6797-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6879-5p 1 1 0
chr20:3804627|3804984 hsa-miR-3620-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6836-5p 1 1 0
chr20:3804627|3804984 hsa-miR-4632-5p 1 1 0
chr20:3804627|3804984 hsa-miR-6735-5p 0 1 0
chr20:3804627|3804984 hsa-miR-6795-5p 1 0 0
chr20:3804627|3804984 hsa-miR-4436b-3p 1 1 0
chr20:3804627|3804984 hsa-miR-4758-5p 1 0 0
chr20:3804627|3804984 hsa-miR-1914-3p 1 1 0
chr20:3804627|3804984 hsa-miR-6855-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6849-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6791-5p 1 0 0
chr20:3804627|3804984 hsa-miR-6862-3p 0 1 0
chr20:3804627|3804984 hsa-miR-6805-3p 1 1 0
chr20:3804627|3804984 hsa-miR-10392-3p 0 1 0
chr20:3804627|3804984 hsa-miR-1234-3p 1 1 0
chr20:3804627|3804984 hsa-miR-4690-3p 0 1 0
chr20:3804627|3804984 hsa-miR-549a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:3804627|3804984
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MYILKGGYKEFFPQHPVAWVGKATVSV
Nucleotide Sequence ATGTATATCCTGAAAGGCGGCTACAAGGAGTTCTTCCCTCAGCACCCGGTAGCGTGGGTGGGGAAGGCCACAGTCTCTGTGTGA
CircID chr20:3804627|3804984
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MAWPGWSHGMGGGRVGSLPNLPIPLH
Nucleotide Sequence TTGGCTTGGCCAGGCTGGAGCCATGGGATGGGGGGTGGGAGGGTTGGGTCCCTGCCAAACTTACCCATTCCACTGCATTGA
CircID chr20:3804627|3804984
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MCEGWLGQAGAMGWGVGGLGPCQTYPFHCIDPSCPALELL
Nucleotide Sequence CTGTGTGAGGGTTGGCTTGGCCAGGCTGGAGCCATGGGATGGGGGGTGGGAGGGTTGGGTCCCTGCCAAACTTACCCATTCCACTGCATTGACCCCTCCTGTCCTGCCCTAGAACTTCTGTGA
CircID chr20:3804627|3804984
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MARLEPWDGGWEGWVPAKLTHSTALTPPVLP
Nucleotide Sequence TTGGCCAGGCTGGAGCCATGGGATGGGGGGTGGGAGGGTTGGGTCCCTGCCAAACTTACCCATTCCACTGCATTGACCCCTCCTGTCCTGCCCTAG
CircID chr20:3804627|3804984
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MNHEAFKDELKTFRLKTRSWAGERSRRELCSRLQDQ
Nucleotide Sequence ATGAACCACGAGGCCTTCAAGGATGAGCTAAAGACCTTCCGCCTCAAGACTCGCAGCTGGGCTGGGGAGCGGAGCCGGCGGGAGCTCTGTAGCCGGCTGCAGGACCAGTGA
CircID chr20:3804627|3804984
ORF Type ORF6
Protein Length 44
Nucleotide Length 135
Protein Sequence MAQAPHWSCSRLQSSRRLRSPAQLRVLRRKVFSSSLKASWFMGR
Nucleotide Sequence CTGGCGCAGGCCCCTCACTGGTCCTGCAGCCGGCTACAGAGCTCCCGCCGGCTCCGCTCCCCAGCCCAGCTGCGAGTCTTGAGGCGGAAGGTCTTTAGCTCATCCTTGAAGGCCTCGTGGTTCATGGGCCGGTAG
CircID chr20:3804627|3804984
ORF Type ORF7
Protein Length 50
Nucleotide Length 150
Protein Sequence MAGTQPSHPPSHGSSLAKPTLTQRLWPSPPTLPGAEGRTPCSRLSGYTSQ
Nucleotide Sequence TTGGCAGGGACCCAACCCTCCCACCCCCCATCCCATGGCTCCAGCCTGGCCAAGCCAACCCTCACACAGAGACTGTGGCCTTCCCCACCCACGCTACCGGGTGCTGAGGGAAGAACTCCTTGTAGCCGCCTTTCAGGATATACATCTCAG
CircID chr20:3804627|3804984
ORF Type ORF8
Protein Length 39
Nucleotide Length 117
Protein Sequence MAPAWPSQPSHRDCGLPHPRYRVLREELLVAAFQDIHLR
Nucleotide Sequence ATGGCTCCAGCCTGGCCAAGCCAACCCTCACACAGAGACTGTGGCCTTCCCCACCCACGCTACCGGGTGCTGAGGGAAGAACTCCTTGTAGCCGCCTTTCAGGATATACATCTCAGG
CircID chr20:3804627|3804984
ORF Type ORF9
Protein Length 26
Nucleotide Length 81
Protein Sequence MVLQPATELPPAPLPSPAASLEAEGL
Nucleotide Sequence CTGGTCCTGCAGCCGGCTACAGAGCTCCCGCCGGCTCCGCTCCCCAGCCCAGCTGCGAGTCTTGAGGCGGAAGGTCTTTAG
CircID chr20:3804627|3804984
ORF Type ORF10
Protein Length 55
Nucleotide Length 168
Protein Sequence MGFTEVLGQDRRGQCSGMGKFGRDPTLPPPIPWLQPGQANPHTETVAFPTHATGC
Nucleotide Sequence CTGGGGTTCACAGAAGTTCTAGGGCAGGACAGGAGGGGTCAATGCAGTGGAATGGGTAAGTTTGGCAGGGACCCAACCCTCCCACCCCCCATCCCATGGCTCCAGCCTGGCCAAGCCAACCCTCACACAGAGACTGTGGCCTTCCCCACCCACGCTACCGGGTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab