CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38128815|38128970
Strand +
CircType exon
Host Gene ENSG00000198959.10;
Algorism CIRI2;
Sequence ACCCCTGCTCTACCCATGAGCCTGCCCGCTGCAATGCCTAGACTTCCCAACAGCCTTAGCTGCCAGTGCTGGTCACTAACCAACAAGGTTGGCACCCCAGCTACCCCTTCTTTGCAGGGCTAAGGCCCCCAAACATAGCCCCTGCCCCGGAGGAAG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38128815|38128970 hsa-miR-484 0 0 1
chr20:38128815|38128970 hsa-miR-527 0 0 1
chr20:38128815|38128970 hsa-miR-608 0 0 1
chr20:38128815|38128970 hsa-miR-634 0 0 1
chr20:38128815|38128970 hsa-miR-645 0 0 1
chr20:38128815|38128970 hsa-miR-1301-5p 0 0 1
chr20:38128815|38128970 hsa-miR-1301-3p 0 0 1
chr20:38128815|38128970 hsa-miR-921 0 0 1
chr20:38128815|38128970 hsa-miR-1256 0 0 1
chr20:38128815|38128970 hsa-miR-1275 0 0 1
chr20:38128815|38128970 hsa-miR-486-3p 0 0 1
chr20:38128815|38128970 hsa-miR-885-3p 1 0 1
chr20:38128815|38128970 hsa-miR-1207-5p 1 0 1
chr20:38128815|38128970 hsa-miR-342-5p 0 0 1
chr20:38128815|38128970 hsa-miR-518a-5p 0 0 1
chr20:38128815|38128970 hsa-miR-1308 0 0 1
chr20:38128815|38128970 hsa-miR-129-3p 0 0 1
chr20:38128815|38128970 hsa-miR-612 1 0 0
chr20:38128815|38128970 hsa-miR-637 1 0 0
chr20:38128815|38128970 hsa-miR-762 1 0 0
chr20:38128815|38128970 hsa-miR-3141 1 0 0
chr20:38128815|38128970 hsa-miR-3154 1 0 0
chr20:38128815|38128970 hsa-miR-3155a 1 0 0
chr20:38128815|38128970 hsa-miR-3621 1 0 0
chr20:38128815|38128970 hsa-miR-3937 1 0 0
chr20:38128815|38128970 hsa-miR-4437 1 0 0
chr20:38128815|38128970 hsa-miR-4467 1 0 0
chr20:38128815|38128970 hsa-miR-3689c 1 0 0
chr20:38128815|38128970 hsa-miR-3155b 1 0 0
chr20:38128815|38128970 hsa-miR-4488 1 0 0
chr20:38128815|38128970 hsa-miR-4498 1 0 0
chr20:38128815|38128970 hsa-miR-4526 1 0 0
chr20:38128815|38128970 hsa-miR-1587 1 0 0
chr20:38128815|38128970 hsa-miR-3960 1 0 0
chr20:38128815|38128970 hsa-miR-4706 1 0 0
chr20:38128815|38128970 hsa-miR-4734 1 0 0
chr20:38128815|38128970 hsa-miR-4741 1 0 0
chr20:38128815|38128970 hsa-miR-4767 1 0 0
chr20:38128815|38128970 hsa-miR-5698 1 0 0
chr20:38128815|38128970 hsa-miR-6860 1 0 0
chr20:38128815|38128970 hsa-miR-8072 1 0 0
chr20:38128815|38128970 hsa-miR-6825-5p 1 0 0
chr20:38128815|38128970 hsa-miR-4687-3p 1 0 0
chr20:38128815|38128970 hsa-miR-125a-3p 1 0 0
chr20:38128815|38128970 hsa-miR-6799-5p 1 0 0
chr20:38128815|38128970 hsa-miR-3192-5p 1 0 0
chr20:38128815|38128970 hsa-miR-24-3p 1 0 0
chr20:38128815|38128970 hsa-miR-6727-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6806-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6721-5p 1 0 0
chr20:38128815|38128970 hsa-miR-503-5p 1 0 0
chr20:38128815|38128970 hsa-miR-5088-5p 1 0 0
chr20:38128815|38128970 hsa-miR-1229-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6771-5p 1 0 0
chr20:38128815|38128970 hsa-miR-4446-3p 1 0 0
chr20:38128815|38128970 hsa-miR-6824-5p 1 0 0
chr20:38128815|38128970 hsa-miR-10400-5p 1 0 0
chr20:38128815|38128970 hsa-miR-1233-5p 1 0 0
chr20:38128815|38128970 hsa-miR-1273h-5p 1 0 0
chr20:38128815|38128970 hsa-miR-3689b-3p 1 0 0
chr20:38128815|38128970 hsa-miR-4763-3p 1 0 0
chr20:38128815|38128970 hsa-miR-6778-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6816-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6775-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6743-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6803-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6813-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6722-3p 1 0 0
chr20:38128815|38128970 hsa-miR-6763-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6779-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6879-5p 1 0 0
chr20:38128815|38128970 hsa-miR-3620-5p 1 0 0
chr20:38128815|38128970 hsa-miR-5189-5p 1 0 0
chr20:38128815|38128970 hsa-miR-5196-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6862-5p 1 0 0
chr20:38128815|38128970 hsa-miR-328-5p 1 0 0
chr20:38128815|38128970 hsa-miR-4685-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6777-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6846-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6848-5p 1 0 0
chr20:38128815|38128970 hsa-miR-6889-5p 1 0 0
chr20:38128815|38128970 hsa-miR-4436b-3p 1 0 0
chr20:38128815|38128970 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:38128815|38128970
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MSLPAAMPRLPNSLSCQCWSLTNKVGTPATPSLQG
Nucleotide Sequence ATGAGCCTGCCCGCTGCAATGCCTAGACTTCCCAACAGCCTTAGCTGCCAGTGCTGGTCACTAACCAACAAGGTTGGCACCCCAGCTACCCCTTCTTTGCAGGGCTAA
CircID chr20:38128815|38128970
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MPVLVTNQQGWHPSYPFFAGLRPPNIAPAPEE
Nucleotide Sequence CTGCCAGTGCTGGTCACTAACCAACAAGGTTGGCACCCCAGCTACCCCTTCTTTGCAGGGCTAAGGCCCCCAAACATAGCCCCTGCCCCGGAGGAA
CircID chr20:38128815|38128970
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MLVSDQHWQLRLLGSLGIAAGRLMGRAG
Nucleotide Sequence TTGTTGGTTAGTGACCAGCACTGGCAGCTAAGGCTGTTGGGAAGTCTAGGCATTGCAGCGGGCAGGCTCATGGGTAGAGCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab