CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38129042|38129182
Strand +
CircType exon
Host Gene ENSG00000198959.10;
Algorism CIRI2;
Sequence TCCATGTTTGCAATGCTTTTATATGGCCCAGCCTTGTAAATAACCACAAGGTCCACTCCCTGCTCCACGAAGCCTTAAGCCATAGGCCCAGGATATTTCTGAGAGTGAAACCATGACTGTGACCACCTTCTGTCCCCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38129042|38129182 hsa-miR-27a-5p 0 0 1
chr20:38129042|38129182 hsa-miR-27a-3p 0 0 1
chr20:38129042|38129182 hsa-miR-27b-5p 0 0 1
chr20:38129042|38129182 hsa-miR-27b-3p 0 0 1
chr20:38129042|38129182 hsa-miR-135b-5p 0 0 1
chr20:38129042|38129182 hsa-miR-135b-3p 0 0 1
chr20:38129042|38129182 hsa-miR-492 0 0 1
chr20:38129042|38129182 hsa-miR-527 0 0 1
chr20:38129042|38129182 hsa-miR-624-5p 0 0 1
chr20:38129042|38129182 hsa-miR-624-3p 0 0 1
chr20:38129042|38129182 hsa-miR-518a-5p 0 0 1
chr20:38129042|38129182 hsa-miR-128 0 0 1
chr20:38129042|38129182 hsa-miR-323-5p 0 0 1
chr20:38129042|38129182 hsa-miR-135a 0 0 1
chr20:38129042|38129182 hsa-miR-612 1 0 0
chr20:38129042|38129182 hsa-miR-637 1 0 0
chr20:38129042|38129182 hsa-miR-650 1 0 0
chr20:38129042|38129182 hsa-miR-2861 1 0 0
chr20:38129042|38129182 hsa-miR-3122 1 0 0
chr20:38129042|38129182 hsa-miR-3147 1 0 0
chr20:38129042|38129182 hsa-miR-3175 1 0 0
chr20:38129042|38129182 hsa-miR-3188 1 0 0
chr20:38129042|38129182 hsa-miR-4298 1 0 0
chr20:38129042|38129182 hsa-miR-4270 1 0 0
chr20:38129042|38129182 hsa-miR-3945 1 0 0
chr20:38129042|38129182 hsa-miR-4440 1 0 0
chr20:38129042|38129182 hsa-miR-4651 1 0 0
chr20:38129042|38129182 hsa-miR-4688 1 0 0
chr20:38129042|38129182 hsa-miR-4739 1 0 0
chr20:38129042|38129182 hsa-miR-5090 1 0 0
chr20:38129042|38129182 hsa-miR-6081 1 0 0
chr20:38129042|38129182 hsa-miR-6860 1 0 0
chr20:38129042|38129182 hsa-miR-8089 1 0 0
chr20:38129042|38129182 hsa-miR-12115 1 0 0
chr20:38129042|38129182 hsa-miR-4731-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6857-5p 1 0 0
chr20:38129042|38129182 hsa-miR-1227-5p 1 0 0
chr20:38129042|38129182 hsa-miR-7114-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6727-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6776-5p 1 0 0
chr20:38129042|38129182 hsa-miR-7845-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6732-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6798-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6514-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6810-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4640-5p 1 0 0
chr20:38129042|38129182 hsa-miR-3127-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4690-5p 1 0 0
chr20:38129042|38129182 hsa-miR-92b-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4732-5p 1 0 0
chr20:38129042|38129182 hsa-miR-7112-5p 1 0 0
chr20:38129042|38129182 hsa-miR-423-5p 1 0 0
chr20:38129042|38129182 hsa-miR-3191-3p 1 0 0
chr20:38129042|38129182 hsa-miR-3158-3p 1 0 0
chr20:38129042|38129182 hsa-miR-1207-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4763-3p 1 0 0
chr20:38129042|38129182 hsa-miR-6743-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6803-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6819-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6851-5p 1 0 0
chr20:38129042|38129182 hsa-miR-1249-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6722-3p 1 0 0
chr20:38129042|38129182 hsa-miR-6774-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6808-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6879-5p 1 0 0
chr20:38129042|38129182 hsa-miR-7111-5p 1 0 0
chr20:38129042|38129182 hsa-miR-5189-5p 1 0 0
chr20:38129042|38129182 hsa-miR-328-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6735-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6846-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6848-5p 1 0 0
chr20:38129042|38129182 hsa-miR-3187-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4436b-3p 1 0 0
chr20:38129042|38129182 hsa-miR-4665-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4700-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4747-5p 1 0 0
chr20:38129042|38129182 hsa-miR-4667-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6724-5p 1 0 0
chr20:38129042|38129182 hsa-miR-6837-5p 1 0 0
chr20:38129042|38129182 hsa-miR-330-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:38129042|38129182
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MVSLSEISWAYGLRLRGAGSGPCGYLQGWAI
Nucleotide Sequence ATGGTTTCACTCTCAGAAATATCCTGGGCCTATGGCTTAAGGCTTCGTGGAGCAGGGAGTGGACCTTGTGGTTATTTACAAGGCTGGGCCATATAA
CircID chr20:38129042|38129182
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence LGTEGGHSHGFTLRNILGLWLKASWSREWTLWLFTRLGHIKALQTW
Nucleotide Sequence CTGGGGACAGAAGGTGGTCACAGTCATGGTTTCACTCTCAGAAATATCCTGGGCCTATGGCTTAAGGCTTCGTGGAGCAGGGAGTGGACCTTGTGGTTATTTACAAGGCTGGGCCATATAAAAGCATTGCAAACATGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab