CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38241425|38241590
Strand -
CircType exon
Host Gene ENSG00000149633.10;
Algorism CIRI2;
Sequence CCTTGGCCAAACTCTGGGCAGGAAGCACCTGGTTGTCTGGGGAGCTGGCCTGGTGCAACTCTTGAGGGCTGCTCAAATCCAGTGCCTCTAATGGAAGGGGCCCCCAGGCTTGGCAGAGGGCATTCACTACTTGGGGTCTGTCATCCACAAACTCTGGGCTGGTTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38241425|38241590 hsa-miR-335-5p 0 0 1
chr20:38241425|38241590 hsa-miR-335-3p 0 0 1
chr20:38241425|38241590 hsa-miR-588 0 0 1
chr20:38241425|38241590 hsa-miR-637 0 0 1
chr20:38241425|38241590 hsa-miR-661 0 0 1
chr20:38241425|38241590 hsa-miR-877-5p 0 0 1
chr20:38241425|38241590 hsa-miR-877-3p 0 0 1
chr20:38241425|38241590 hsa-miR-1290 0 0 1
chr20:38241425|38241590 hsa-miR-1243 0 0 1
chr20:38241425|38241590 hsa-miR-1255a 0 0 1
chr20:38241425|38241590 hsa-miR-1257 0 0 1
chr20:38241425|38241590 hsa-miR-296-5p 0 0 1
chr20:38241425|38241590 hsa-miR-767-5p 0 0 1
chr20:38241425|38241590 hsa-miR-885-5p 0 0 1
chr20:38241425|38241590 hsa-miR-876-5p 0 0 1
chr20:38241425|38241590 hsa-miR-516a-3p 0 1 1
chr20:38241425|38241590 hsa-miR-1255b 0 0 1
chr20:38241425|38241590 hsa-miR-365 0 0 1
chr20:38241425|38241590 hsa-miR-198 1 0 0
chr20:38241425|38241590 hsa-miR-764 0 1 0
chr20:38241425|38241590 hsa-miR-5685 0 1 0
chr20:38241425|38241590 hsa-miR-378j 0 1 0
chr20:38241425|38241590 hsa-miR-4726-3p 1 0 0
chr20:38241425|38241590 hsa-miR-6720-5p 1 0 0
chr20:38241425|38241590 hsa-miR-6744-5p 0 1 0
chr20:38241425|38241590 hsa-miR-6858-3p 1 0 0
chr20:38241425|38241590 hsa-miR-615-3p 0 1 0
chr20:38241425|38241590 hsa-miR-3691-5p 1 1 0
chr20:38241425|38241590 hsa-miR-4733-3p 0 1 0
chr20:38241425|38241590 hsa-miR-6866-5p 0 1 0
chr20:38241425|38241590 hsa-miR-3681-5p 1 1 0
chr20:38241425|38241590 hsa-miR-584-3p 0 1 0
chr20:38241425|38241590 hsa-miR-2276-5p 0 1 0
chr20:38241425|38241590 hsa-miR-3940-3p 1 0 0
chr20:38241425|38241590 hsa-miR-2355-5p 0 1 0
chr20:38241425|38241590 hsa-miR-6512-5p 0 1 0
chr20:38241425|38241590 hsa-miR-3127-3p 0 1 0
chr20:38241425|38241590 hsa-miR-4726-5p 1 0 0
chr20:38241425|38241590 hsa-miR-6764-5p 0 1 0
chr20:38241425|38241590 hsa-miR-4690-3p 1 0 0
chr20:38241425|38241590 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:38241425|38241590
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MGSWPGATLEGCSNPVPLMEGAPRLGRGHSLLGVCHPQTLGWL
Nucleotide Sequence CTGGGGAGCTGGCCTGGTGCAACTCTTGAGGGCTGCTCAAATCCAGTGCCTCTAATGGAAGGGGCCCCCAGGCTTGGCAGAGGGCATTCACTACTTGGGGTCTGTCATCCACAAACTCTGGGCTGGTTA
CircID chr20:38241425|38241590
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGRKHLVVWGAGLVQLLRAAQIQCL
Nucleotide Sequence CTGGGCAGGAAGCACCTGGTTGTCTGGGGAGCTGGCCTGGTGCAACTCTTGAGGGCTGCTCAAATCCAGTGCCTCTAA
CircID chr20:38241425|38241590
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MLKSSASNGRGPQAWQRAFTTWGLSSTNSGLV
Nucleotide Sequence CTGCTCAAATCCAGTGCCTCTAATGGAAGGGGCCCCCAGGCTTGGCAGAGGGCATTCACTACTTGGGGTCTGTCATCCACAAACTCTGGGCTGGTT
CircID chr20:38241425|38241590
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MDLSSPQELHQASSPDNQVLPAQSLAK
Nucleotide Sequence CTGGATTTGAGCAGCCCTCAAGAGTTGCACCAGGCCAGCTCCCCAGACAACCAGGTGCTTCCTGCCCAGAGTTTGGCCAAG
CircID chr20:38241425|38241590
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MPSLGAPSIRGTGFEQPSRVAPGQLPRQPGASCPEFGQ
Nucleotide Sequence CTGCCAAGCCTGGGGGCCCCTTCCATTAGAGGCACTGGATTTGAGCAGCCCTCAAGAGTTGCACCAGGCCAGCTCCCCAGACAACCAGGTGCTTCCTGCCCAGAGTTTGGCCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab