CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38420848|38421054
Strand +
CircType exon
Host Gene ENSG00000196756.10;
Algorism CIRI2;
Sequence CATGGAGTTGGTGATCTGGGATCTGGGTTTGCTGATATTTCTCACCGTGGTGAGTTGATGCCAAGAGCCAGAACCCACAGCCAGAGGCTCAGCTGGTCCGTGTTTATGCAGATGGGAACCTCAAATCACTGGTCTCACTTGTCCTTTGTTTCAGAATCTCTTGGTGGTGTTTGTGGGCACGAGAGGGGCAGAGAATGGAGAGTGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38420848|38421054 hsa-miR-197-5p 0 0 1
chr20:38420848|38421054 hsa-miR-197-3p 0 0 1
chr20:38420848|38421054 hsa-miR-136-5p 0 0 1
chr20:38420848|38421054 hsa-miR-136-3p 0 0 1
chr20:38420848|38421054 hsa-miR-149-5p 0 0 1
chr20:38420848|38421054 hsa-miR-149-3p 0 0 1
chr20:38420848|38421054 hsa-miR-494-5p 0 0 1
chr20:38420848|38421054 hsa-miR-494-3p 0 0 1
chr20:38420848|38421054 hsa-miR-539-5p 0 0 1
chr20:38420848|38421054 hsa-miR-539-3p 0 0 1
chr20:38420848|38421054 hsa-miR-545-5p 0 0 1
chr20:38420848|38421054 hsa-miR-545-3p 0 0 1
chr20:38420848|38421054 hsa-miR-760 0 0 1
chr20:38420848|38421054 hsa-miR-1304-5p 0 0 1
chr20:38420848|38421054 hsa-miR-1304-3p 0 0 1
chr20:38420848|38421054 hsa-miR-769-5p 0 0 1
chr20:38420848|38421054 hsa-miR-324-3p 0 0 1
chr20:38420848|38421054 hsa-miR-220b 0 0 1
chr20:38420848|38421054 hsa-miR-602 1 1 0
chr20:38420848|38421054 hsa-miR-1913 0 1 0
chr20:38420848|38421054 hsa-miR-4642 0 1 0
chr20:38420848|38421054 hsa-miR-4654 1 0 0
chr20:38420848|38421054 hsa-miR-4663 0 1 0
chr20:38420848|38421054 hsa-miR-4788 1 1 0
chr20:38420848|38421054 hsa-miR-7974 0 1 0
chr20:38420848|38421054 hsa-miR-8062 0 1 0
chr20:38420848|38421054 hsa-miR-8080 0 1 0
chr20:38420848|38421054 hsa-miR-12127 1 0 0
chr20:38420848|38421054 hsa-miR-210-5p 1 0 0
chr20:38420848|38421054 hsa-miR-4786-5p 0 1 0
chr20:38420848|38421054 hsa-miR-3064-5p 0 1 0
chr20:38420848|38421054 hsa-miR-127-3p 1 0 0
chr20:38420848|38421054 hsa-miR-6793-5p 1 1 0
chr20:38420848|38421054 hsa-miR-6728-3p 0 1 0
chr20:38420848|38421054 hsa-miR-6882-3p 1 0 0
chr20:38420848|38421054 hsa-miR-615-5p 1 0 0
chr20:38420848|38421054 hsa-miR-6772-3p 1 1 0
chr20:38420848|38421054 hsa-miR-4640-5p 1 0 0
chr20:38420848|38421054 hsa-miR-6847-5p 0 1 0
chr20:38420848|38421054 hsa-miR-6769a-3p 1 0 0
chr20:38420848|38421054 hsa-miR-3619-3p 1 0 0
chr20:38420848|38421054 hsa-miR-6828-3p 0 1 0
chr20:38420848|38421054 hsa-miR-3940-3p 0 1 0
chr20:38420848|38421054 hsa-miR-4749-3p 1 1 0
chr20:38420848|38421054 hsa-miR-6794-3p 0 1 0
chr20:38420848|38421054 hsa-miR-4639-3p 0 1 0
chr20:38420848|38421054 hsa-miR-3617-3p 0 1 0
chr20:38420848|38421054 hsa-miR-4726-5p 1 0 0
chr20:38420848|38421054 hsa-miR-1199-5p 0 1 0
chr20:38420848|38421054 hsa-miR-6877-3p 0 1 0
chr20:38420848|38421054 hsa-miR-6751-3p 0 1 0
chr20:38420848|38421054 hsa-miR-1295b-5p 0 1 0
chr20:38420848|38421054 hsa-miR-6504-5p 0 1 0
chr20:38420848|38421054 hsa-miR-433-5p 0 1 0
chr20:38420848|38421054 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:38420848|38421054
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MGSGFADISHRGELMPRARTHSQRLSWSVFMQMGTSNHWSHLSFVSESLGGVCGHERGREWRVR
Nucleotide Sequence CTGGGATCTGGGTTTGCTGATATTTCTCACCGTGGTGAGTTGATGCCAAGAGCCAGAACCCACAGCCAGAGGCTCAGCTGGTCCGTGTTTATGCAGATGGGAACCTCAAATCACTGGTCTCACTTGTCCTTTGTTTCAGAATCTCTTGGTGGTGTTTGTGGGCACGAGAGGGGCAGAGAATGGAGAGTGAGG
CircID chr20:38420848|38421054
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MVRVYADGNLKSLVSLVLCFRISWWCLWAREGQRMESE
Nucleotide Sequence CTGGTCCGTGTTTATGCAGATGGGAACCTCAAATCACTGGTCTCACTTGTCCTTTGTTTCAGAATCTCTTGGTGGTGTTTGTGGGCACGAGAGGGGCAGAGAATGGAGAGTGAG
CircID chr20:38420848|38421054
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MHKHGPAEPLAVGSGSWHQLTTVRNISKPRSQITNSM
Nucleotide Sequence CTGCATAAACACGGACCAGCTGAGCCTCTGGCTGTGGGTTCTGGCTCTTGGCATCAACTCACCACGGTGAGAAATATCAGCAAACCCAGATCCCAGATCACCAACTCCATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab