CircRNA Information

General Information
circRNA Basic Information
CircID chr20:3867615|3867775
Strand +
CircType exon
Host Gene ENSG00000088888.16;
Algorism CIRI2;
Sequence GCCCTATATCCTCCATCCTGTACAGCTGCCCAGTGGACATACCTCTCTCCCCAGCAATTTCTCAAGGCACAAGATAAAGTAAGGGGCAAATACAAAGATAAAGCTGTGAGGCAGGAGGGTCTGAGTCTGCCTCTAAAGGAGTAGCCAAGACTCCTGTTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:3867615|3867775 hsa-miR-185-5p 0 0 1
chr20:3867615|3867775 hsa-miR-185-3p 0 0 1
chr20:3867615|3867775 hsa-miR-202-5p 0 0 1
chr20:3867615|3867775 hsa-miR-202-3p 0 0 1
chr20:3867615|3867775 hsa-miR-539-5p 0 0 1
chr20:3867615|3867775 hsa-miR-539-3p 0 0 1
chr20:3867615|3867775 hsa-miR-580-5p 0 0 1
chr20:3867615|3867775 hsa-miR-580-3p 0 0 1
chr20:3867615|3867775 hsa-miR-581 0 0 1
chr20:3867615|3867775 hsa-miR-612 0 0 1
chr20:3867615|3867775 hsa-miR-765 0 0 1
chr20:3867615|3867775 hsa-miR-877-5p 0 0 1
chr20:3867615|3867775 hsa-miR-877-3p 0 0 1
chr20:3867615|3867775 hsa-miR-924 0 0 1
chr20:3867615|3867775 hsa-miR-939-5p 0 0 1
chr20:3867615|3867775 hsa-miR-939-3p 0 0 1
chr20:3867615|3867775 hsa-miR-1303 0 0 1
chr20:3867615|3867775 hsa-miR-302f 0 0 1
chr20:3867615|3867775 hsa-miR-1827 0 0 1
chr20:3867615|3867775 hsa-miR-550 0 0 1
chr20:3867615|3867775 hsa-miR-1300 0 0 1
chr20:3867615|3867775 hsa-miR-1285 0 0 1
chr20:3867615|3867775 hsa-miR-1185 0 0 1
chr20:3867615|3867775 hsa-miR-484 0 1 0
chr20:3867615|3867775 hsa-miR-658 1 0 0
chr20:3867615|3867775 hsa-miR-1976 0 1 0
chr20:3867615|3867775 hsa-miR-3147 1 0 0
chr20:3867615|3867775 hsa-miR-3175 1 1 0
chr20:3867615|3867775 hsa-miR-2392 0 1 0
chr20:3867615|3867775 hsa-miR-4534 0 1 0
chr20:3867615|3867775 hsa-miR-4706 1 0 0
chr20:3867615|3867775 hsa-miR-5090 1 0 0
chr20:3867615|3867775 hsa-miR-5739 1 0 0
chr20:3867615|3867775 hsa-miR-5787 1 0 0
chr20:3867615|3867775 hsa-miR-6860 0 1 0
chr20:3867615|3867775 hsa-miR-8085 1 1 0
chr20:3867615|3867775 hsa-miR-8089 1 1 0
chr20:3867615|3867775 hsa-miR-10226 1 0 0
chr20:3867615|3867775 hsa-miR-150-3p 1 0 0
chr20:3867615|3867775 hsa-miR-4731-5p 1 0 0
chr20:3867615|3867775 hsa-miR-1273h-3p 0 1 0
chr20:3867615|3867775 hsa-miR-6861-5p 1 0 0
chr20:3867615|3867775 hsa-miR-6894-5p 0 1 0
chr20:3867615|3867775 hsa-miR-3192-5p 1 0 0
chr20:3867615|3867775 hsa-miR-6880-5p 0 1 0
chr20:3867615|3867775 hsa-miR-6762-3p 1 0 0
chr20:3867615|3867775 hsa-miR-197-5p 1 0 0
chr20:3867615|3867775 hsa-miR-5589-5p 1 0 0
chr20:3867615|3867775 hsa-miR-486-3p 1 1 0
chr20:3867615|3867775 hsa-miR-6772-3p 1 0 0
chr20:3867615|3867775 hsa-miR-1229-5p 1 0 0
chr20:3867615|3867775 hsa-miR-149-3p 1 0 0
chr20:3867615|3867775 hsa-miR-6824-5p 1 0 0
chr20:3867615|3867775 hsa-miR-550b-2-5p 1 1 0
chr20:3867615|3867775 hsa-miR-3189-3p 1 0 0
chr20:3867615|3867775 hsa-miR-6866-5p 0 1 0
chr20:3867615|3867775 hsa-miR-660-3p 0 1 0
chr20:3867615|3867775 hsa-miR-4749-3p 1 0 0
chr20:3867615|3867775 hsa-miR-4771 0 1 0
chr20:3867615|3867775 hsa-miR-6812-5p 1 0 0
chr20:3867615|3867775 hsa-miR-6870-5p 1 0 0
chr20:3867615|3867775 hsa-miR-1249-5p 0 1 0
chr20:3867615|3867775 hsa-miR-6763-5p 1 0 0
chr20:3867615|3867775 hsa-miR-5189-5p 1 1 0
chr20:3867615|3867775 hsa-miR-4632-5p 1 0 0
chr20:3867615|3867775 hsa-miR-6795-5p 1 0 0
chr20:3867615|3867775 hsa-miR-6846-5p 1 0 0
chr20:3867615|3867775 hsa-miR-3187-5p 1 1 0
chr20:3867615|3867775 hsa-miR-1910-3p 0 1 0
chr20:3867615|3867775 hsa-miR-30c-1-3p 1 1 0
chr20:3867615|3867775 hsa-miR-6731-5p 0 1 0
chr20:3867615|3867775 hsa-miR-6856-5p 0 1 0
chr20:3867615|3867775 hsa-miR-1271-3p 1 0 0
chr20:3867615|3867775 hsa-miR-4700-5p 0 1 0
chr20:3867615|3867775 hsa-miR-3679-5p 0 1 0
chr20:3867615|3867775 hsa-miR-4646-5p 1 0 0
chr20:3867615|3867775 hsa-miR-4667-5p 0 1 0
chr20:3867615|3867775 hsa-miR-550a-3-5p 1 0 0
chr20:3867615|3867775 hsa-miR-550a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:3867615|3867775
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MYLPLTLSCALRNCWGERYVHWAAVQDGGYR
Nucleotide Sequence TTGTATTTGCCCCTTACTTTATCTTGTGCCTTGAGAAATTGCTGGGGAGAGAGGTATGTCCACTGGGCAGCTGTACAGGATGGAGGATATAGG
CircID chr20:3867615|3867775
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MATPLEADSDPPASQLYLCICPLLYLVP
Nucleotide Sequence TTGGCTACTCCTTTAGAGGCAGACTCAGACCCTCCTGCCTCACAGCTTTATCTTTGTATTTGCCCCTTACTTTATCTTGTGCCTTGA
CircID chr20:3867615|3867775
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MPHSFIFVFAPYFILCLEKLLGREVCPLGSCTGWRI
Nucleotide Sequence CTGCCTCACAGCTTTATCTTTGTATTTGCCCCTTACTTTATCTTGTGCCTTGAGAAATTGCTGGGGAGAGAGGTATGTCCACTGGGCAGCTGTACAGGATGGAGGATATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab