CircRNA Information

General Information
circRNA Basic Information
CircID chr20:3875680|3875824
Strand +
CircType exon
Host Gene ENSG00000088888.16;
Algorism CIRI2;
Sequence CTGGGGATGGGGGAGGCAGGACGGAGATGGAGGAAGCTGGTGCAGCCTAGCCTGCCTTGTGCCAAGGACACCCAAGGGCAGAGGGACTGAGCTCTGGGGGAGGACAGATTTGACATAACTGGTCCAGCCTCACAGTTTACAGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:3875680|3875824 hsa-miR-30a-5p 0 0 1
chr20:3875680|3875824 hsa-miR-30a-3p 0 0 1
chr20:3875680|3875824 hsa-miR-96-5p 0 0 1
chr20:3875680|3875824 hsa-miR-96-3p 0 0 1
chr20:3875680|3875824 hsa-miR-30d-5p 0 0 1
chr20:3875680|3875824 hsa-miR-30d-3p 0 0 1
chr20:3875680|3875824 hsa-miR-30b-5p 0 0 1
chr20:3875680|3875824 hsa-miR-30b-3p 0 0 1
chr20:3875680|3875824 hsa-miR-30e-5p 0 0 1
chr20:3875680|3875824 hsa-miR-30e-3p 0 0 1
chr20:3875680|3875824 hsa-miR-609 0 0 1
chr20:3875680|3875824 hsa-miR-645 0 0 1
chr20:3875680|3875824 hsa-miR-1271-5p 0 0 1
chr20:3875680|3875824 hsa-miR-1271-3p 0 0 1
chr20:3875680|3875824 hsa-miR-938 0 0 1
chr20:3875680|3875824 hsa-miR-940 0 0 1
chr20:3875680|3875824 hsa-miR-1226-5p 0 0 1
chr20:3875680|3875824 hsa-miR-1226-3p 0 0 1
chr20:3875680|3875824 hsa-miR-1294 0 0 1
chr20:3875680|3875824 hsa-miR-548g-5p 0 0 1
chr20:3875680|3875824 hsa-miR-548g-3p 0 0 1
chr20:3875680|3875824 hsa-miR-1262 0 0 1
chr20:3875680|3875824 hsa-miR-767-5p 0 0 1
chr20:3875680|3875824 hsa-miR-485-5p 0 1 1
chr20:3875680|3875824 hsa-miR-361-3p 0 1 1
chr20:3875680|3875824 hsa-miR-324-3p 1 0 1
chr20:3875680|3875824 hsa-miR-455-3p 0 0 1
chr20:3875680|3875824 hsa-miR-516a-3p 0 0 1
chr20:3875680|3875824 hsa-miR-642 0 0 1
chr20:3875680|3875824 hsa-miR-30c 0 0 1
chr20:3875680|3875824 hsa-miR-647 1 0 0
chr20:3875680|3875824 hsa-miR-3909 1 0 0
chr20:3875680|3875824 hsa-miR-5193 0 1 0
chr20:3875680|3875824 hsa-miR-6069 1 0 0
chr20:3875680|3875824 hsa-miR-12116 1 0 0
chr20:3875680|3875824 hsa-miR-6749-3p 1 1 0
chr20:3875680|3875824 hsa-miR-18a-3p 0 1 0
chr20:3875680|3875824 hsa-miR-6747-3p 0 1 0
chr20:3875680|3875824 hsa-miR-6765-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6836-3p 0 1 0
chr20:3875680|3875824 hsa-miR-593-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6762-3p 1 0 0
chr20:3875680|3875824 hsa-let-7i-3p 1 0 0
chr20:3875680|3875824 hsa-miR-6726-3p 1 0 0
chr20:3875680|3875824 hsa-miR-7855-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6882-3p 1 0 0
chr20:3875680|3875824 hsa-miR-4436b-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6884-3p 1 0 0
chr20:3875680|3875824 hsa-miR-7111-3p 1 0 0
chr20:3875680|3875824 hsa-miR-1237-3p 1 0 0
chr20:3875680|3875824 hsa-miR-1236-3p 1 0 0
chr20:3875680|3875824 hsa-miR-6804-3p 1 0 0
chr20:3875680|3875824 hsa-miR-6778-3p 0 1 0
chr20:3875680|3875824 hsa-miR-6895-3p 1 1 0
chr20:3875680|3875824 hsa-miR-7151-5p 0 1 0
chr20:3875680|3875824 hsa-miR-6760-3p 1 0 0
chr20:3875680|3875824 hsa-miR-7152-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6893-5p 0 1 0
chr20:3875680|3875824 hsa-miR-6808-5p 0 1 0
chr20:3875680|3875824 hsa-miR-4685-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6791-3p 0 1 0
chr20:3875680|3875824 hsa-miR-6792-3p 1 1 0
chr20:3875680|3875824 hsa-miR-6862-3p 1 0 0
chr20:3875680|3875824 hsa-miR-9851-3p 1 0 0
chr20:3875680|3875824 hsa-miR-3059-5p 1 0 0
chr20:3875680|3875824 hsa-miR-6884-5p 0 1 0
chr20:3875680|3875824 hsa-miR-6827-3p 1 0 0
chr20:3875680|3875824 hsa-miR-7162-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr20:3875680|3875824
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LGMGEAGRRWRKLVQPSLPCAKDTQGQRD
Nucleotide Sequence CTGGGGATGGGGGAGGCAGGACGGAGATGGAGGAAGCTGGTGCAGCCTAGCCTGCCTTGTGCCAAGGACACCCAAGGGCAGAGGGACTGA

CircID chr20:3875680|3875824
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MDQLCQICPPPELSPSALGCPWHKAG
Nucleotide Sequence CTGGACCAGTTATGTCAAATCTGTCCTCCCCCAGAGCTCAGTCCCTCTGCCCTTGGGTGTCCTTGGCACAAGGCAGGCTAG

CircID chr20:3875680|3875824
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MPLGVLGTRQARLHQLPPSPSCLPHPQ
Nucleotide Sequence CTGCCCTTGGGTGTCCTTGGCACAAGGCAGGCTAGGCTGCACCAGCTTCCTCCATCTCCGTCCTGCCTCCCCCATCCCCAG

CircID chr20:3875680|3875824
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MSNLSSPRAQSLCPWVSLAQGRLGCTSFLHLRPASPIP
Nucleotide Sequence ATGTCAAATCTGTCCTCCCCCAGAGCTCAGTCCCTCTGCCCTTGGGTGTCCTTGGCACAAGGCAGGCTAGGCTGCACCAGCTTCCTCCATCTCCGTCCTGCCTCCCCCATCCCC

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites