CircRNA Information

General Information
circRNA Basic Information
CircID chr20:38877452|38877589
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTAATCCCAGCACTTTGGGAGCCCGAGGCGGATGGATCACCTGACGTCAGGATTTCGAGATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGTGGGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:38877452|38877589 hsa-miR-17-5p 0 0 1
chr20:38877452|38877589 hsa-miR-17-3p 0 0 1
chr20:38877452|38877589 hsa-miR-20a-5p 0 0 1
chr20:38877452|38877589 hsa-miR-20a-3p 0 0 1
chr20:38877452|38877589 hsa-miR-93-5p 0 0 1
chr20:38877452|38877589 hsa-miR-93-3p 0 0 1
chr20:38877452|38877589 hsa-miR-106a-5p 0 0 1
chr20:38877452|38877589 hsa-miR-106a-3p 0 0 1
chr20:38877452|38877589 hsa-miR-197-5p 0 0 1
chr20:38877452|38877589 hsa-miR-197-3p 0 0 1
chr20:38877452|38877589 hsa-miR-150-5p 0 0 1
chr20:38877452|38877589 hsa-miR-150-3p 0 0 1
chr20:38877452|38877589 hsa-miR-106b-5p 0 0 1
chr20:38877452|38877589 hsa-miR-106b-3p 0 0 1
chr20:38877452|38877589 hsa-miR-302a-5p 0 0 1
chr20:38877452|38877589 hsa-miR-302a-3p 0 0 1
chr20:38877452|38877589 hsa-miR-302b-5p 0 0 1
chr20:38877452|38877589 hsa-miR-302b-3p 0 0 1
chr20:38877452|38877589 hsa-miR-302c-5p 0 0 1
chr20:38877452|38877589 hsa-miR-302c-3p 0 0 1
chr20:38877452|38877589 hsa-miR-302d-5p 0 0 1
chr20:38877452|38877589 hsa-miR-302d-3p 0 0 1
chr20:38877452|38877589 hsa-miR-372-5p 0 0 1
chr20:38877452|38877589 hsa-miR-372-3p 0 0 1
chr20:38877452|38877589 hsa-miR-373-5p 0 0 1
chr20:38877452|38877589 hsa-miR-373-3p 0 0 1
chr20:38877452|38877589 hsa-miR-20b-5p 0 0 1
chr20:38877452|38877589 hsa-miR-20b-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520e-5p 0 0 1
chr20:38877452|38877589 hsa-miR-520e-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520b-5p 0 0 1
chr20:38877452|38877589 hsa-miR-520b-3p 0 0 1
chr20:38877452|38877589 hsa-miR-519d-5p 0 0 1
chr20:38877452|38877589 hsa-miR-519d-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520g-5p 0 0 1
chr20:38877452|38877589 hsa-miR-520g-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520h 0 0 1
chr20:38877452|38877589 hsa-miR-588 0 0 1
chr20:38877452|38877589 hsa-miR-640 0 0 1
chr20:38877452|38877589 hsa-miR-411-5p 0 0 1
chr20:38877452|38877589 hsa-miR-411-3p 0 0 1
chr20:38877452|38877589 hsa-miR-302e 0 0 1
chr20:38877452|38877589 hsa-miR-125a-3p 0 0 1
chr20:38877452|38877589 hsa-miR-129-5p 0 0 1
chr20:38877452|38877589 hsa-miR-512-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520d-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520a-3p 0 0 1
chr20:38877452|38877589 hsa-miR-520c-3p 0 0 1
chr20:38877452|38877589 hsa-miR-590-3p 0 0 1
chr20:38877452|38877589 hsa-miR-220b 0 0 1
chr20:38877452|38877589 hsa-miR-762 1 0 0
chr20:38877452|38877589 hsa-miR-1303 0 1 0
chr20:38877452|38877589 hsa-miR-4258 1 0 0
chr20:38877452|38877589 hsa-miR-3929 0 1 0
chr20:38877452|38877589 hsa-miR-12115 1 0 0
chr20:38877452|38877589 hsa-miR-29b-2-5p 0 1 0
chr20:38877452|38877589 hsa-miR-6757-5p 1 0 0
chr20:38877452|38877589 hsa-miR-23b-5p 1 0 0
chr20:38877452|38877589 hsa-miR-23a-5p 1 0 0
chr20:38877452|38877589 hsa-miR-615-5p 1 0 0
chr20:38877452|38877589 hsa-miR-3944-3p 0 1 0
chr20:38877452|38877589 hsa-miR-378a-5p 0 1 0
chr20:38877452|38877589 hsa-miR-10400-3p 1 0 0
chr20:38877452|38877589 hsa-miR-6511b-3p 0 1 0
chr20:38877452|38877589 hsa-miR-619-5p 0 1 0
chr20:38877452|38877589 hsa-miR-135a-2-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:38877452|38877589
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MDHLTSGFRDQPGQHGETPSLLKIQKKLAGRGGGC
Nucleotide Sequence ATGGATCACCTGACGTCAGGATTTCGAGATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGTGGGTGC
CircID chr20:38877452|38877589
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MGFHHVGQADLEILTSGDPSASGSQSAGIT
Nucleotide Sequence ATGGGGTTTCACCATGTTGGCCAGGCTGATCTCGAAATCCTGACGTCAGGTGATCCATCCGCCTCGGGCTCCCAAAGTGCTGGGATTACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab