CircRNA Information

General Information
circRNA Basic Information
CircID chr20:4023916|4024172
Strand -
CircType exon
Host Gene ENSG00000226608.3;
Algorism CIRI2;
Sequence CATGAGCTCCCAGATTCGTCAAAATTATTCCACCGACGTGGAGGCAGCCGTCAACAGCCTGGTCAATTTGTACCTGCAGGCCTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGCGGCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGACCGAGGAGAAGCGCGAGGGCTACGAGCGTCTCCTGAAGATGCAAAACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGAAGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:4023916|4024172 hsa-let-7b-5p 0 0 1
chr20:4023916|4024172 hsa-let-7b-3p 0 0 1
chr20:4023916|4024172 hsa-let-7c-5p 0 0 1
chr20:4023916|4024172 hsa-let-7c-3p 0 0 1
chr20:4023916|4024172 hsa-let-7d-5p 0 0 1
chr20:4023916|4024172 hsa-let-7d-3p 0 0 1
chr20:4023916|4024172 hsa-let-7e-5p 0 0 1
chr20:4023916|4024172 hsa-let-7e-3p 0 0 1
chr20:4023916|4024172 hsa-miR-98-5p 0 0 1
chr20:4023916|4024172 hsa-miR-98-3p 0 0 1
chr20:4023916|4024172 hsa-let-7g-5p 0 0 1
chr20:4023916|4024172 hsa-let-7g-3p 0 0 1
chr20:4023916|4024172 hsa-let-7i-5p 0 0 1
chr20:4023916|4024172 hsa-let-7i-3p 0 0 1
chr20:4023916|4024172 hsa-miR-526b-5p 0 0 1
chr20:4023916|4024172 hsa-miR-526b-3p 0 0 1
chr20:4023916|4024172 hsa-miR-507 0 0 1
chr20:4023916|4024172 hsa-miR-557 0 0 1
chr20:4023916|4024172 hsa-miR-657 0 0 1
chr20:4023916|4024172 hsa-miR-920 0 0 1
chr20:4023916|4024172 hsa-miR-1205 0 0 1
chr20:4023916|4024172 hsa-miR-1267 0 0 1
chr20:4023916|4024172 hsa-miR-139-3p 0 1 1
chr20:4023916|4024172 hsa-miR-525-5p 0 0 1
chr20:4023916|4024172 hsa-miR-520a-5p 0 0 1
chr20:4023916|4024172 hsa-miR-450b-5p 0 0 1
chr20:4023916|4024172 hsa-miR-590-3p 0 0 1
chr20:4023916|4024172 hsa-miR-7 0 0 1
chr20:4023916|4024172 hsa-let-7a 0 0 1
chr20:4023916|4024172 hsa-let-7f 0 0 1
chr20:4023916|4024172 hsa-miR-129-3p 0 0 1
chr20:4023916|4024172 hsa-miR-24 0 0 1
chr20:4023916|4024172 hsa-miR-198 1 1 0
chr20:4023916|4024172 hsa-miR-3185 0 1 0
chr20:4023916|4024172 hsa-miR-4266 1 1 0
chr20:4023916|4024172 hsa-miR-4270 1 0 0
chr20:4023916|4024172 hsa-miR-3665 1 0 0
chr20:4023916|4024172 hsa-miR-4458 1 1 0
chr20:4023916|4024172 hsa-miR-4479 1 1 0
chr20:4023916|4024172 hsa-miR-4510 1 0 0
chr20:4023916|4024172 hsa-miR-4739 1 1 0
chr20:4023916|4024172 hsa-miR-4767 1 0 0
chr20:4023916|4024172 hsa-miR-5194 1 0 0
chr20:4023916|4024172 hsa-miR-5739 1 0 0
chr20:4023916|4024172 hsa-miR-6077 0 1 0
chr20:4023916|4024172 hsa-miR-6127 1 0 0
chr20:4023916|4024172 hsa-miR-6129 1 1 0
chr20:4023916|4024172 hsa-miR-6133 1 0 0
chr20:4023916|4024172 hsa-miR-8074 1 0 0
chr20:4023916|4024172 hsa-miR-8085 1 0 0
chr20:4023916|4024172 hsa-miR-127-5p 1 0 0
chr20:4023916|4024172 hsa-miR-432-3p 1 0 0
chr20:4023916|4024172 hsa-miR-4665-3p 1 0 0
chr20:4023916|4024172 hsa-miR-671-5p 1 1 0
chr20:4023916|4024172 hsa-miR-136-3p 0 1 0
chr20:4023916|4024172 hsa-miR-4687-3p 0 1 0
chr20:4023916|4024172 hsa-miR-6799-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6089 1 0 0
chr20:4023916|4024172 hsa-miR-4695-5p 1 0 0
chr20:4023916|4024172 hsa-miR-4722-5p 1 0 0
chr20:4023916|4024172 hsa-miR-3189-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6772-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6760-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6881-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6735-3p 1 0 0
chr20:4023916|4024172 hsa-miR-1229-5p 1 0 0
chr20:4023916|4024172 hsa-miR-1908-3p 0 1 0
chr20:4023916|4024172 hsa-miR-6803-3p 0 1 0
chr20:4023916|4024172 hsa-miR-149-3p 1 0 0
chr20:4023916|4024172 hsa-miR-6802-5p 1 0 0
chr20:4023916|4024172 hsa-miR-7113-5p 1 0 0
chr20:4023916|4024172 hsa-miR-4795-5p 0 1 0
chr20:4023916|4024172 hsa-miR-1233-5p 1 0 0
chr20:4023916|4024172 hsa-miR-1273h-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6769b-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6778-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6893-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6743-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6752-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6754-5p 1 0 0
chr20:4023916|4024172 hsa-miR-10401-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6779-5p 1 0 0
chr20:4023916|4024172 hsa-miR-1909-3p 1 0 0
chr20:4023916|4024172 hsa-miR-4649-5p 1 0 0
chr20:4023916|4024172 hsa-miR-4726-5p 1 0 0
chr20:4023916|4024172 hsa-miR-4749-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6738-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6831-5p 1 0 0
chr20:4023916|4024172 hsa-miR-6758-5p 1 1 0
chr20:4023916|4024172 hsa-miR-6856-5p 0 1 0
chr20:4023916|4024172 hsa-miR-1271-3p 1 0 0
chr20:4023916|4024172 hsa-miR-1914-3p 1 0 0
chr20:4023916|4024172 hsa-miR-10398-3p 1 0 0
chr20:4023916|4024172 hsa-miR-3928-5p 1 0 0
chr20:4023916|4024172 hsa-miR-5581-5p 0 1 0
chr20:4023916|4024172 hsa-miR-10394-5p 0 1 0
chr20:4023916|4024172 hsa-miR-4690-3p 1 0 0
chr20:4023916|4024172 hsa-miR-103a-1-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:4023916|4024172
ORF Type ORF1
Protein Length 85
Nucleotide Length 255
Protein Sequence MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDAALEGVSHFFRELTEEKREGYERLLKMQNQRGGRALFQDIKKP
Nucleotide Sequence ATGAGCTCCCAGATTCGTCAAAATTATTCCACCGACGTGGAGGCAGCCGTCAACAGCCTGGTCAATTTGTACCTGCAGGCCTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGCGGCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGACCGAGGAGAAGCGCGAGGGCTACGAGCGTCTCCTGAAGATGCAAAACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGAAGCCA
CircID chr20:4023916|4024172
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MEESAAATLVLHLQETLVALALLLGQFAEEVAHAFQSRIIAVEIEAQREVGVGGLQVQIDQAVDGCLHVGGIILTNLGAH
Nucleotide Sequence CTGGAAGAGAGCGCGGCCGCCACGCTGGTTTTGCATCTTCAGGAGACGCTCGTAGCCCTCGCGCTTCTCCTCGGTCAATTCGCGGAAGAAGTGGCTCACGCCTTCCAGAGCCGCATCATCGCGGTCGAAATAGAAGCCCAGAGAGAGGTAGGTGTAGGAGGCCTGCAGGTACAAATTGACCAGGCTGTTGACGGCTGCCTCCACGTCGGTGGAATAATTTTGACGAATCTGGGAGCTCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab