CircRNA Information

General Information
circRNA Basic Information
CircID chr20:408626|408779
Strand +
CircType exon
Host Gene ENSG00000125826.18;
Algorism CIRI2;
Sequence CTTTCTTGGTCTTCTCGTCCATCTGGCGTGGCTGTGCCCATCCCCCTGGGGGGGACCGTGCCTCCTGGGAAATGCTACCTCCGGGTCGCCTGGGAGAGGCGGGAGACCAGGAGCAACTCAGCCAGGCCGTGTGGCCTCCGGCGCGGCCCAAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:408626|408779 hsa-let-7b-5p 0 0 1
chr20:408626|408779 hsa-let-7b-3p 0 0 1
chr20:408626|408779 hsa-let-7c-5p 0 0 1
chr20:408626|408779 hsa-let-7c-3p 0 0 1
chr20:408626|408779 hsa-let-7d-5p 0 0 1
chr20:408626|408779 hsa-let-7d-3p 0 0 1
chr20:408626|408779 hsa-let-7e-5p 0 0 1
chr20:408626|408779 hsa-let-7e-3p 0 0 1
chr20:408626|408779 hsa-miR-98-5p 0 0 1
chr20:408626|408779 hsa-miR-98-3p 0 0 1
chr20:408626|408779 hsa-let-7g-5p 0 0 1
chr20:408626|408779 hsa-let-7g-3p 0 0 1
chr20:408626|408779 hsa-let-7i-5p 0 0 1
chr20:408626|408779 hsa-let-7i-3p 0 0 1
chr20:408626|408779 hsa-miR-150-5p 0 0 1
chr20:408626|408779 hsa-miR-150-3p 0 0 1
chr20:408626|408779 hsa-miR-564 0 0 1
chr20:408626|408779 hsa-miR-571 0 0 1
chr20:408626|408779 hsa-miR-635 0 0 1
chr20:408626|408779 hsa-miR-650 1 0 1
chr20:408626|408779 hsa-miR-665 1 0 1
chr20:408626|408779 hsa-miR-1179 0 0 1
chr20:408626|408779 hsa-miR-1234-3p 0 0 1
chr20:408626|408779 hsa-miR-1253 0 0 1
chr20:408626|408779 hsa-miR-1234 0 0 1
chr20:408626|408779 hsa-miR-532-3p 0 0 1
chr20:408626|408779 hsa-miR-361-3p 0 0 1
chr20:408626|408779 hsa-let-7a 0 0 1
chr20:408626|408779 hsa-let-7f 0 0 1
chr20:408626|408779 hsa-miR-219-1-3p 0 0 1
chr20:408626|408779 hsa-miR-762 1 0 0
chr20:408626|408779 hsa-miR-3183 1 0 0
chr20:408626|408779 hsa-miR-3937 1 0 0
chr20:408626|408779 hsa-miR-4534 1 0 0
chr20:408626|408779 hsa-miR-4651 1 0 0
chr20:408626|408779 hsa-miR-4747-3p 1 0 0
chr20:408626|408779 hsa-miR-6894-5p 1 0 0
chr20:408626|408779 hsa-miR-6757-5p 1 0 0
chr20:408626|408779 hsa-miR-6880-5p 1 0 0
chr20:408626|408779 hsa-miR-6798-5p 1 0 0
chr20:408626|408779 hsa-miR-6735-3p 1 0 0
chr20:408626|408779 hsa-miR-4743-5p 1 0 0
chr20:408626|408779 hsa-miR-4787-5p 1 0 0
chr20:408626|408779 hsa-miR-5010-5p 1 0 0
chr20:408626|408779 hsa-miR-1225-5p 1 0 0
chr20:408626|408779 hsa-miR-1233-5p 1 0 0
chr20:408626|408779 hsa-miR-6865-5p 1 0 0
chr20:408626|408779 hsa-miR-6752-5p 1 0 0
chr20:408626|408779 hsa-miR-6803-5p 1 0 0
chr20:408626|408779 hsa-miR-6851-5p 1 0 0
chr20:408626|408779 hsa-miR-1915-3p 1 0 0
chr20:408626|408779 hsa-miR-3620-5p 1 0 0
chr20:408626|408779 hsa-miR-5189-5p 1 0 0
chr20:408626|408779 hsa-miR-6848-5p 1 0 0
chr20:408626|408779 hsa-miR-6887-5p 1 0 0
chr20:408626|408779 hsa-miR-6831-5p 1 0 0
chr20:408626|408779 hsa-miR-541-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:408626|408779
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MGGTVPPGKCYLRVAWERRETRSNSARPCGLRRGPS
Nucleotide Sequence CTGGGGGGGACCGTGCCTCCTGGGAAATGCTACCTCCGGGTCGCCTGGGAGAGGCGGGAGACCAGGAGCAACTCAGCCAGGCCGTGTGGCCTCCGGCGCGGCCCAAGC
CircID chr20:408626|408779
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MAWLCPSPWGGPCLLGNATSGSPGRGGRPGATQPGRVASGAAQA
Nucleotide Sequence CTGGCGTGGCTGTGCCCATCCCCCTGGGGGGGACCGTGCCTCCTGGGAAATGCTACCTCCGGGTCGCCTGGGAGAGGCGGGAGACCAGGAGCAACTCAGCCAGGCCGTGTGGCCTCCGGCGCGGCCCAAGCC
CircID chr20:408626|408779
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MVFSSIWRGCAHPPGGDRASWEMLPPGRLGEAGDQEQLSQAVWPPARPK
Nucleotide Sequence TTGGTCTTCTCGTCCATCTGGCGTGGCTGTGCCCATCCCCCTGGGGGGGACCGTGCCTCCTGGGAAATGCTACCTCCGGGTCGCCTGGGAGAGGCGGGAGACCAGGAGCAACTCAGCCAGGCCGTGTGGCCTCCGGCGCGGCCCAAG
CircID chr20:408626|408779
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MGRAGGHTAWLSCSWSPASPRRPGGSISQEARSPPGGWAQPRQMDEKTKK
Nucleotide Sequence TTGGGCCGCGCCGGAGGCCACACGGCCTGGCTGAGTTGCTCCTGGTCTCCCGCCTCTCCCAGGCGACCCGGAGGTAGCATTTCCCAGGAGGCACGGTCCCCCCCAGGGGGATGGGCACAGCCACGCCAGATGGACGAGAAGACCAAGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab