CircRNA Information

General Information
circRNA Basic Information
CircID chr20:41165509|41165796
Strand -
CircType antisense
Host Gene ENSG00000124181.14;
Algorism CIRI2;
Sequence GTCTCACTCTCTCGCACGAGGAAGGAGCCGTCAGGGGCTCCGGTCTCGATGCAGTACTCAGTAAGCAGGCGCTCAGCGATGTGACGCCCGTCACGCCCTGCCCCTAGCTTCCCATGGAACCACTTCTCATTGGAGTGCAGCTCTGTGCTGCTGCTGACCTCCTTGGGCTCCTCCTCATCCTCGTTGCCCTGGTCACTGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:41165509|41165796 hsa-miR-122-5p 0 0 1
chr20:41165509|41165796 hsa-miR-122-3p 0 0 1
chr20:41165509|41165796 hsa-miR-504-5p 0 0 1
chr20:41165509|41165796 hsa-miR-504-3p 0 0 1
chr20:41165509|41165796 hsa-miR-510-5p 0 0 1
chr20:41165509|41165796 hsa-miR-510-3p 0 0 1
chr20:41165509|41165796 hsa-miR-545-5p 0 0 1
chr20:41165509|41165796 hsa-miR-545-3p 0 0 1
chr20:41165509|41165796 hsa-miR-558 0 0 1
chr20:41165509|41165796 hsa-miR-631 1 1 1
chr20:41165509|41165796 hsa-miR-635 0 0 1
chr20:41165509|41165796 hsa-miR-1301-5p 0 0 1
chr20:41165509|41165796 hsa-miR-1301-3p 0 0 1
chr20:41165509|41165796 hsa-miR-892a 0 0 1
chr20:41165509|41165796 hsa-miR-874-5p 0 0 1
chr20:41165509|41165796 hsa-miR-874-3p 0 0 1
chr20:41165509|41165796 hsa-miR-512-5p 0 0 1
chr20:41165509|41165796 hsa-miR-146b-3p 0 0 1
chr20:41165509|41165796 hsa-miR-361-3p 0 1 1
chr20:41165509|41165796 hsa-miR-628-5p 0 0 1
chr20:41165509|41165796 hsa-miR-324-3p 0 0 1
chr20:41165509|41165796 hsa-miR-326 1 0 0
chr20:41165509|41165796 hsa-miR-663b 0 1 0
chr20:41165509|41165796 hsa-miR-4326 0 1 0
chr20:41165509|41165796 hsa-miR-4265 1 0 0
chr20:41165509|41165796 hsa-miR-4268 1 1 0
chr20:41165509|41165796 hsa-miR-4280 0 1 0
chr20:41165509|41165796 hsa-miR-4292 1 0 0
chr20:41165509|41165796 hsa-miR-3943 1 1 0
chr20:41165509|41165796 hsa-miR-4476 0 1 0
chr20:41165509|41165796 hsa-miR-4533 0 1 0
chr20:41165509|41165796 hsa-miR-4660 0 1 0
chr20:41165509|41165796 hsa-miR-4767 1 0 0
chr20:41165509|41165796 hsa-miR-5193 1 1 0
chr20:41165509|41165796 hsa-miR-9718 0 1 0
chr20:41165509|41165796 hsa-miR-12116 1 0 0
chr20:41165509|41165796 hsa-miR-6749-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6845-3p 1 0 0
chr20:41165509|41165796 hsa-miR-3663-5p 1 0 0
chr20:41165509|41165796 hsa-miR-877-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6827-5p 1 1 0
chr20:41165509|41165796 hsa-miR-6735-3p 1 0 0
chr20:41165509|41165796 hsa-miR-1343-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6803-3p 1 0 0
chr20:41165509|41165796 hsa-miR-3677-3p 1 0 0
chr20:41165509|41165796 hsa-miR-5196-3p 1 1 0
chr20:41165509|41165796 hsa-miR-6789-5p 1 0 0
chr20:41165509|41165796 hsa-miR-1306-5p 1 0 0
chr20:41165509|41165796 hsa-miR-6786-3p 0 1 0
chr20:41165509|41165796 hsa-miR-6889-3p 1 0 0
chr20:41165509|41165796 hsa-miR-1224-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6752-3p 0 1 0
chr20:41165509|41165796 hsa-miR-6792-5p 0 1 0
chr20:41165509|41165796 hsa-miR-5088-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6773-3p 0 1 0
chr20:41165509|41165796 hsa-miR-1229-3p 1 0 0
chr20:41165509|41165796 hsa-miR-3173-5p 0 1 0
chr20:41165509|41165796 hsa-miR-6734-3p 1 0 0
chr20:41165509|41165796 hsa-miR-4797-3p 0 1 0
chr20:41165509|41165796 hsa-miR-758-3p 0 1 0
chr20:41165509|41165796 hsa-miR-4763-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6812-5p 1 0 0
chr20:41165509|41165796 hsa-miR-6813-5p 0 1 0
chr20:41165509|41165796 hsa-miR-4685-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6754-3p 1 0 0
chr20:41165509|41165796 hsa-miR-5196-5p 0 1 0
chr20:41165509|41165796 hsa-miR-6780b-5p 0 1 0
chr20:41165509|41165796 hsa-miR-1909-3p 1 0 0
chr20:41165509|41165796 hsa-miR-4725-3p 0 1 0
chr20:41165509|41165796 hsa-miR-6799-3p 0 1 0
chr20:41165509|41165796 hsa-miR-6791-3p 1 1 0
chr20:41165509|41165796 hsa-miR-6876-5p 0 1 0
chr20:41165509|41165796 hsa-miR-10398-5p 1 0 0
chr20:41165509|41165796 hsa-miR-6862-3p 1 0 0
chr20:41165509|41165796 hsa-miR-10401-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6810-3p 0 1 0
chr20:41165509|41165796 hsa-miR-4723-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6511b-3p 1 0 0
chr20:41165509|41165796 hsa-miR-6891-3p 1 1 0
chr20:41165509|41165796 hsa-miR-6783-3p 1 0 0
chr20:41165509|41165796 hsa-miR-4691-5p 1 0 0
chr20:41165509|41165796 hsa-miR-1234-3p 0 1 0
chr20:41165509|41165796 hsa-miR-550a-3p 0 1 0
chr20:41165509|41165796 hsa-miR-3922-3p 0 1 0
chr20:41165509|41165796 hsa-miR-7157-3p 0 1 0
chr20:41165509|41165796 hsa-miR-202-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:41165509|41165796
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGQVRPGPGSQYLCCCLPLTGQQQHRAALQ
Nucleotide Sequence CTGGGCCAGGTCAGGCCTGGGCCAGGGTCACAGTATCTTTGCTGTTGCCTTCCCCTGACAGGTCAGCAGCAGCACAGAGCTGCACTCCAATGA
CircID chr20:41165509|41165796
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MHSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESE
Nucleotide Sequence CTGCACTCCAATGAGAAGTGGTTCCATGGGAAGCTAGGGGCAGGGCGTGACGGGCGTCACATCGCTGAGCGCCTGCTTACTGAGTACTGCATCGAGACCGGAGCCCCTGACGGCTCCTTCCTCGTGCGAGAGAGTGAG
CircID chr20:41165509|41165796
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MGAGPGQAWARVTVSLLLPSPDRSAAAQSCTPMRSGSMGS
Nucleotide Sequence CTGGGGGCTGGGCCAGGTCAGGCCTGGGCCAGGGTCACAGTATCTTTGCTGTTGCCTTCCCCTGACAGGTCAGCAGCAGCACAGAGCTGCACTCCAATGAGAAGTGGTTCCATGGGAAGCTAG
CircID chr20:41165509|41165796
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MSACLLSTASRPEPLTAPSSCERVR
Nucleotide Sequence CTGAGCGCCTGCTTACTGAGTACTGCATCGAGACCGGAGCCCCTGACGGCTCCTTCCTCGTGCGAGAGAGTGAGA
CircID chr20:41165509|41165796
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MAQPPDLSWFLTSLGSSSSSLPWSLL
Nucleotide Sequence CTGGCCCAGCCCCCAGACCTGAGCTGGTTCCTCACCTCCTTGGGCTCCTCCTCATCCTCGTTGCCCTGGTCACTGCTG
CircID chr20:41165509|41165796
ORF Type ORF6
Protein Length 31
Nucleotide Length 96
Protein Sequence MEPLLIGVQLCAAADLSGEGNSKDTVTLAQA
Nucleotide Sequence ATGGAACCACTTCTCATTGGAGTGCAGCTCTGTGCTGCTGCTGACCTGTCAGGGGAAGGCAACAGCAAAGATACTGTGACCCTGGCCCAGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr20:41165509|41165796 NOP56 2 1 0
chr20:41165509|41165796 MOV10 4 0 0
chr20:41165509|41165796 ELAVL1 1 2 1
chr20:41165509|41165796 SF3B4 6 0 0
chr20:41165509|41165796 PRPF8 10 1 0
chr20:41165509|41165796 UPF1 1 0 0
chr20:41165509|41165796 TNRC6A 3 0 0
chr20:41165509|41165796 CAPRIN1 1 0 0
chr20:41165509|41165796 FMR1 21 15 6
chr20:41165509|41165796 VIM 1 0 0
chr20:41165509|41165796 FUS 5 4 0
chr20:41165509|41165796 GNL3 0 1 0
chr20:41165509|41165796 DGCR8 0 1 0
chr20:41165509|41165796 SRSF7 5 3 1
chr20:41165509|41165796 SRSF1 5 6 4
chr20:41165509|41165796 NOP58 6 4 1
chr20:41165509|41165796 U2AF1 6 4 1
chr20:41165509|41165796 U2AF2 9 5 0
chr20:41165509|41165796 SRSF9 3 0 0
chr20:41165509|41165796 DDX54 17 15 7
chr20:41165509|41165796 RBM10 10 15 0
chr20:41165509|41165796 HNRNPL 5 0 0
chr20:41165509|41165796 HNRNPA2B1 2 0 0
chr20:41165509|41165796 SF3A3 4 2 0
chr20:41165509|41165796 PTBP1 1 0 0
chr20:41165509|41165796 HNRNPC 0 1 0
chr20:41165509|41165796 TRA2A 2 6 2
chr20:41165509|41165796 ZNF184 1 2 1
chr20:41165509|41165796 ACIN1 2 2 0
chr20:41165509|41165796 SMNDC1 5 0 0
chr20:41165509|41165796 AUH 2 0 0
chr20:41165509|41165796 HNRNPA1 2 0 0
chr20:41165509|41165796 LIN28B 0 1 1
chr20:41165509|41165796 FXR1 5 2 2
chr20:41165509|41165796 FXR2 5 0 2
chr20:41165509|41165796 SND1 2 0 1
chr20:41165509|41165796 IGF2BP1 3 2 0
chr20:41165509|41165796 IGF2BP3 5 2 0
chr20:41165509|41165796 IGF2BP2 18 13 1
chr20:41165509|41165796 NPM1 1 0 0
chr20:41165509|41165796 HNRNPUL1 1 0 0
chr20:41165509|41165796 TARDBP 1 2 0
chr20:41165509|41165796 TAF15 2 1 0
chr20:41165509|41165796 AIFM1 2 2 0
chr20:41165509|41165796 BUD13 7 3 1
chr20:41165509|41165796 RBFOX2 0 1 0
chr20:41165509|41165796 CNBP 0 1 0
chr20:41165509|41165796 CSTF2T 3 3 1
chr20:41165509|41165796 BCCIP 1 0 0
chr20:41165509|41165796 YWHAG 1 1 0
chr20:41165509|41165796 HNRNPK 1 2 0
chr20:41165509|41165796 AGO2 5 1 0
chr20:41165509|41165796 AGO1 4 2 0
chr20:41165509|41165796 EIF4A3 12 9 2
chr20:41165509|41165796 FBL 6 6 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab