CircRNA Information

General Information
circRNA Basic Information
CircID chr20:41168815|41169175
Strand +
CircType exon
Host Gene ENSG00000124181.13;
Algorism CIRI2;
Sequence CTCCCTCTCCGGCTCCAGGGCCACGGGGTTGACCATCTCTTCCACGTAGTTTGATGGGAACCACAGCTGCTTCTTCCCTCCGTAGTCCCCTCGCCACCTGTGGGAGCCACAGGGTGCTGACCTCCAGCAACCACCCCGAACTCCCATGAGGAGGGTATCCTTTGGTAGGGGTTCCCATGCCTAAGCCAGGGTGAGGCAGGCACTGCTGGTGCACACAGGAGACAAGCACATCACAAATGCATGTCTTTGGGGCCCCAGCTCCACTGGGGCCCTTGGACTCTGGGCCTACCACACCACTGGCTTACCAGCCTCCCTCTTGCTTCTCCACATTCTGGATGATGGCGCTCTTGATGAAGGTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:41168815|41169175 hsa-miR-10a-5p 0 0 1
chr20:41168815|41169175 hsa-miR-10a-3p 0 0 1
chr20:41168815|41169175 hsa-miR-10b-5p 0 0 1
chr20:41168815|41169175 hsa-miR-10b-3p 0 0 1
chr20:41168815|41169175 hsa-miR-205-5p 0 0 1
chr20:41168815|41169175 hsa-miR-205-3p 0 0 1
chr20:41168815|41169175 hsa-miR-328-5p 0 0 1
chr20:41168815|41169175 hsa-miR-328-3p 0 0 1
chr20:41168815|41169175 hsa-miR-335-5p 0 0 1
chr20:41168815|41169175 hsa-miR-335-3p 0 0 1
chr20:41168815|41169175 hsa-miR-519e-5p 0 0 1
chr20:41168815|41169175 hsa-miR-519e-3p 0 0 1
chr20:41168815|41169175 hsa-miR-552-5p 0 0 1
chr20:41168815|41169175 hsa-miR-552-3p 0 0 1
chr20:41168815|41169175 hsa-miR-575 0 0 1
chr20:41168815|41169175 hsa-miR-586 0 0 1
chr20:41168815|41169175 hsa-miR-608 1 1 1
chr20:41168815|41169175 hsa-miR-634 0 0 1
chr20:41168815|41169175 hsa-miR-636 0 1 1
chr20:41168815|41169175 hsa-miR-641 0 0 1
chr20:41168815|41169175 hsa-miR-646 0 0 1
chr20:41168815|41169175 hsa-miR-758-5p 0 0 1
chr20:41168815|41169175 hsa-miR-758-3p 0 0 1
chr20:41168815|41169175 hsa-miR-1226-5p 0 0 1
chr20:41168815|41169175 hsa-miR-1226-3p 0 0 1
chr20:41168815|41169175 hsa-miR-663b 1 1 1
chr20:41168815|41169175 hsa-miR-1204 0 0 1
chr20:41168815|41169175 hsa-miR-1287-5p 0 0 1
chr20:41168815|41169175 hsa-miR-1287-3p 0 0 1
chr20:41168815|41169175 hsa-miR-1291 0 1 1
chr20:41168815|41169175 hsa-miR-1293 0 1 1
chr20:41168815|41169175 hsa-miR-1292-5p 0 0 1
chr20:41168815|41169175 hsa-miR-1292-3p 0 0 1
chr20:41168815|41169175 hsa-miR-1321 0 0 1
chr20:41168815|41169175 hsa-miR-296-5p 0 0 1
chr20:41168815|41169175 hsa-miR-532-3p 0 0 1
chr20:41168815|41169175 hsa-miR-767-5p 0 0 1
chr20:41168815|41169175 hsa-miR-485-5p 0 0 1
chr20:41168815|41169175 hsa-miR-339-3p 0 1 1
chr20:41168815|41169175 hsa-miR-188-3p 0 0 1
chr20:41168815|41169175 hsa-miR-876-3p 0 0 1
chr20:41168815|41169175 hsa-miR-515-3p 0 0 1
chr20:41168815|41169175 hsa-miR-550 0 0 1
chr20:41168815|41169175 hsa-miR-7 0 0 1
chr20:41168815|41169175 hsa-miR-1308 0 0 1
chr20:41168815|41169175 hsa-miR-218 0 0 1
chr20:41168815|41169175 hsa-miR-663a 1 0 0
chr20:41168815|41169175 hsa-miR-658 1 1 0
chr20:41168815|41169175 hsa-miR-762 1 0 0
chr20:41168815|41169175 hsa-miR-298 1 0 0
chr20:41168815|41169175 hsa-miR-760 1 0 0
chr20:41168815|41169175 hsa-miR-2861 1 0 0
chr20:41168815|41169175 hsa-miR-1193 1 1 0
chr20:41168815|41169175 hsa-miR-3185 0 1 0
chr20:41168815|41169175 hsa-miR-4281 1 0 0
chr20:41168815|41169175 hsa-miR-4450 1 0 0
chr20:41168815|41169175 hsa-miR-4466 1 0 0
chr20:41168815|41169175 hsa-miR-4483 0 1 0
chr20:41168815|41169175 hsa-miR-4651 1 1 0
chr20:41168815|41169175 hsa-miR-4657 0 1 0
chr20:41168815|41169175 hsa-miR-4689 1 0 0
chr20:41168815|41169175 hsa-miR-4706 1 0 0
chr20:41168815|41169175 hsa-miR-4710 1 0 0
chr20:41168815|41169175 hsa-miR-4739 1 1 0
chr20:41168815|41169175 hsa-miR-5194 1 0 0
chr20:41168815|41169175 hsa-miR-5698 1 0 0
chr20:41168815|41169175 hsa-miR-5703 0 1 0
chr20:41168815|41169175 hsa-miR-5787 1 0 0
chr20:41168815|41169175 hsa-miR-6077 0 1 0
chr20:41168815|41169175 hsa-miR-6127 1 1 0
chr20:41168815|41169175 hsa-miR-6129 0 1 0
chr20:41168815|41169175 hsa-miR-6133 1 1 0
chr20:41168815|41169175 hsa-miR-7150 1 0 0
chr20:41168815|41169175 hsa-miR-8052 1 1 0
chr20:41168815|41169175 hsa-miR-8072 1 0 0
chr20:41168815|41169175 hsa-miR-12115 0 1 0
chr20:41168815|41169175 hsa-miR-203a-5p 0 1 0
chr20:41168815|41169175 hsa-miR-132-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6734-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4731-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6747-3p 0 1 0
chr20:41168815|41169175 hsa-miR-671-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6825-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6894-5p 1 0 0
chr20:41168815|41169175 hsa-miR-218-1-3p 0 1 0
chr20:41168815|41169175 hsa-miR-6799-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6515-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6089 1 0 0
chr20:41168815|41169175 hsa-miR-6807-5p 1 1 0
chr20:41168815|41169175 hsa-miR-7847-3p 1 1 0
chr20:41168815|41169175 hsa-miR-4653-3p 1 0 0
chr20:41168815|41169175 hsa-miR-4722-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6762-3p 1 0 0
chr20:41168815|41169175 hsa-miR-6727-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4474-3p 0 1 0
chr20:41168815|41169175 hsa-miR-3622b-5p 0 1 0
chr20:41168815|41169175 hsa-miR-3187-3p 1 0 0
chr20:41168815|41169175 hsa-miR-874-3p 1 0 0
chr20:41168815|41169175 hsa-miR-218-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6742-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6871-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6732-5p 1 0 0
chr20:41168815|41169175 hsa-miR-3190-3p 0 1 0
chr20:41168815|41169175 hsa-miR-6805-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6798-5p 1 0 0
chr20:41168815|41169175 hsa-miR-2467-3p 1 0 0
chr20:41168815|41169175 hsa-miR-6782-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6874-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6821-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6852-5p 0 1 0
chr20:41168815|41169175 hsa-miR-4763-5p 1 1 0
chr20:41168815|41169175 hsa-miR-3944-3p 1 0 0
chr20:41168815|41169175 hsa-miR-6894-3p 0 1 0
chr20:41168815|41169175 hsa-miR-3202 1 0 0
chr20:41168815|41169175 hsa-miR-149-3p 1 0 0
chr20:41168815|41169175 hsa-miR-146b-3p 0 1 0
chr20:41168815|41169175 hsa-miR-516b-5p 1 0 0
chr20:41168815|41169175 hsa-miR-7160-3p 0 1 0
chr20:41168815|41169175 hsa-miR-3191-3p 1 0 0
chr20:41168815|41169175 hsa-miR-6499-3p 1 1 0
chr20:41168815|41169175 hsa-miR-660-3p 0 1 0
chr20:41168815|41169175 hsa-miR-4687-5p 1 0 0
chr20:41168815|41169175 hsa-miR-519d-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6871-3p 1 1 0
chr20:41168815|41169175 hsa-miR-1296-3p 0 1 0
chr20:41168815|41169175 hsa-miR-3620-3p 0 1 0
chr20:41168815|41169175 hsa-miR-1185-5p 0 1 0
chr20:41168815|41169175 hsa-miR-3617-3p 0 1 0
chr20:41168815|41169175 hsa-miR-10400-5p 1 0 0
chr20:41168815|41169175 hsa-miR-1233-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4763-3p 1 0 0
chr20:41168815|41169175 hsa-miR-6778-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6787-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6812-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6865-5p 1 1 0
chr20:41168815|41169175 hsa-miR-5001-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6737-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6752-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6754-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6756-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6803-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6813-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6815-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6819-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6842-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6851-5p 1 0 0
chr20:41168815|41169175 hsa-miR-1249-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6751-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6774-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6797-5p 1 1 0
chr20:41168815|41169175 hsa-miR-7111-5p 1 0 0
chr20:41168815|41169175 hsa-miR-3620-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4728-5p 1 1 0
chr20:41168815|41169175 hsa-miR-10396a-5p 1 0 0
chr20:41168815|41169175 hsa-miR-10396b-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4649-5p 1 0 0
chr20:41168815|41169175 hsa-miR-4725-3p 1 0 0
chr20:41168815|41169175 hsa-miR-4745-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6729-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6738-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6794-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6795-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6846-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6848-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6858-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6883-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6887-5p 1 1 0
chr20:41168815|41169175 hsa-miR-4723-5p 1 0 0
chr20:41168815|41169175 hsa-miR-939-5p 1 0 0
chr20:41168815|41169175 hsa-miR-365a-5p 1 0 0
chr20:41168815|41169175 hsa-miR-365b-5p 1 0 0
chr20:41168815|41169175 hsa-miR-1271-3p 0 1 0
chr20:41168815|41169175 hsa-miR-1914-3p 1 0 0
chr20:41168815|41169175 hsa-miR-4665-5p 1 0 0
chr20:41168815|41169175 hsa-miR-541-3p 0 1 0
chr20:41168815|41169175 hsa-miR-6785-5p 1 0 0
chr20:41168815|41169175 hsa-miR-6791-5p 0 1 0
chr20:41168815|41169175 hsa-miR-6862-3p 1 0 0
chr20:41168815|41169175 hsa-miR-4756-5p 1 1 0
chr20:41168815|41169175 hsa-miR-6884-5p 0 1 0
chr20:41168815|41169175 hsa-miR-4676-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:41168815|41169175
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MSLGPQLHWGPWTLGLPHHWLTSLPLASPHSG
Nucleotide Sequence ATGTCTTTGGGGCCCCAGCTCCACTGGGGCCCTTGGACTCTGGGCCTACCACACCACTGGCTTACCAGCCTCCCTCTTGCTTCTCCACATTCTGGATGA
CircID chr20:41168815|41169175
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MWEPQGADLQQPPRTPMRRVSFGRGSHA
Nucleotide Sequence CTGTGGGAGCCACAGGGTGCTGACCTCCAGCAACCACCCCGAACTCCCATGAGGAGGGTATCCTTTGGTAGGGGTTCCCATGCCTAA
CircID chr20:41168815|41169175
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MLVHTGDKHITNACLWGPSSTGALGLWAYHTTGLPASLLLLHILDDGALDEGQ
Nucleotide Sequence CTGCTGGTGCACACAGGAGACAAGCACATCACAAATGCATGTCTTTGGGGCCCCAGCTCCACTGGGGCCCTTGGACTCTGGGCCTACCACACCACTGGCTTACCAGCCTCCCTCTTGCTTCTCCACATTCTGGATGATGGCGCTCTTGATGAAGGTCAG
CircID chr20:41168815|41169175
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MMGTTAASSLRSPLATCGSHRVLTSSNHPELP
Nucleotide Sequence TTGATGGGAACCACAGCTGCTTCTTCCCTCCGTAGTCCCCTCGCCACCTGTGGGAGCCACAGGGTGCTGACCTCCAGCAACCACCCCGAACTCCCATGA
CircID chr20:41168815|41169175
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MHVFGAPAPLGPLDSGPTTPLAYQPPSCFSTFWMMALLMKV
Nucleotide Sequence ATGCATGTCTTTGGGGCCCCAGCTCCACTGGGGCCCTTGGACTCTGGGCCTACCACACCACTGGCTTACCAGCCTCCCTCTTGCTTCTCCACATTCTGGATGATGGCGCTCTTGATGAAGGTC
CircID chr20:41168815|41169175
ORF Type ORF6
Protein Length 66
Nucleotide Length 198
Protein Sequence MPHPGLGMGTPTKGYPPHGSSGWLLEVSTLWLPQVARGLRREEAAVVPIKLRGRDGQPRGPGAGEG
Nucleotide Sequence CTGCCTCACCCTGGCTTAGGCATGGGAACCCCTACCAAAGGATACCCTCCTCATGGGAGTTCGGGGTGGTTGCTGGAGGTCAGCACCCTGTGGCTCCCACAGGTGGCGAGGGGACTACGGAGGGAAGAAGCAGCTGTGGTTCCCATCAAACTACGTGGAAGAGATGGTCAACCCCGTGGCCCTGGAGCCGGAGAGGGA
CircID chr20:41168815|41169175
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MGPQRHAFVMCLSPVCTSSACLTLA
Nucleotide Sequence CTGGGGCCCCAAAGACATGCATTTGTGATGTGCTTGTCTCCTGTGTGCACCAGCAGTGCCTGCCTCACCCTGGCTTAG
CircID chr20:41168815|41169175
ORF Type ORF8
Protein Length 49
Nucleotide Length 147
Protein Sequence MGVRGGCWRSAPCGSHRWRGDYGGKKQLWFPSNYVEEMVNPVALEPERE
Nucleotide Sequence ATGGGAGTTCGGGGTGGTTGCTGGAGGTCAGCACCCTGTGGCTCCCACAGGTGGCGAGGGGACTACGGAGGGAAGAAGCAGCTGTGGTTCCCATCAAACTACGTGGAAGAGATGGTCAACCCCGTGGCCCTGGAGCCGGAGAGGGAG
CircID chr20:41168815|41169175
ORF Type ORF9
Protein Length 25
Nucleotide Length 78
Protein Sequence MVSQWCGRPRVQGPQWSWGPKDMHL
Nucleotide Sequence CTGGTAAGCCAGTGGTGTGGTAGGCCCAGAGTCCAAGGGCCCCAGTGGAGCTGGGGCCCCAAAGACATGCATTTGTGA
CircID chr20:41168815|41169175
ORF Type ORF10
Protein Length 72
Nucleotide Length 216
Protein Sequence MCAPAVPASPWLRHGNPYQRIPSSWEFGVVAGGQHPVAPTGGEGTTEGRSSCGSHQTTWKRWSTPWPWSRRG
Nucleotide Sequence CTGTGTGCACCAGCAGTGCCTGCCTCACCCTGGCTTAGGCATGGGAACCCCTACCAAAGGATACCCTCCTCATGGGAGTTCGGGGTGGTTGCTGGAGGTCAGCACCCTGTGGCTCCCACAGGTGGCGAGGGGACTACGGAGGGAAGAAGCAGCTGTGGTTCCCATCAAACTACGTGGAAGAGATGGTCAACCCCGTGGCCCTGGAGCCGGAGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab