CircRNA Information

General Information
circRNA Basic Information
CircID chr20:41175371|41175587
Strand +
CircType exon
Host Gene ENSG00000124181.13;
Algorism CIRI2;
Sequence CTTTGCGCCCACGGGCCTGGACCCCGGCCTCTGTCCTCAGAGGTGAGGGCTGCCTTTCTAACCTTCCCATCTCCATCCCTGGATCTTTTTACCAGTTAGAAGCTGCAGCAAGGATGGCAGCTTCATTCAGCACCTAACTGCCTGTACCCCACCCACCCAGGAGTCAGGCAACTCCTCAATCCCTTTTTCATTCCTCAGGGAAAGCATACTGAGTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:41175371|41175587 hsa-miR-22-5p 0 0 1
chr20:41175371|41175587 hsa-miR-22-3p 0 0 1
chr20:41175371|41175587 hsa-miR-345-5p 0 0 1
chr20:41175371|41175587 hsa-miR-345-3p 0 0 1
chr20:41175371|41175587 hsa-miR-620 0 0 1
chr20:41175371|41175587 hsa-miR-1301-5p 0 0 1
chr20:41175371|41175587 hsa-miR-1301-3p 0 0 1
chr20:41175371|41175587 hsa-miR-1293 0 0 1
chr20:41175371|41175587 hsa-miR-1270 0 0 1
chr20:41175371|41175587 hsa-miR-127-5p 0 0 1
chr20:41175371|41175587 hsa-miR-1224-5p 0 0 1
chr20:41175371|41175587 hsa-miR-615-5p 0 1 1
chr20:41175371|41175587 hsa-miR-1184 0 1 1
chr20:41175371|41175587 hsa-miR-502-5p 0 0 1
chr20:41175371|41175587 hsa-miR-125a-5p 0 0 1
chr20:41175371|41175587 hsa-miR-362-5p 0 0 1
chr20:41175371|41175587 hsa-miR-582-3p 0 0 1
chr20:41175371|41175587 hsa-miR-1274a 0 0 1
chr20:41175371|41175587 hsa-miR-125b 0 0 1
chr20:41175371|41175587 hsa-miR-1201 0 0 1
chr20:41175371|41175587 hsa-miR-608 1 1 0
chr20:41175371|41175587 hsa-miR-640 1 0 0
chr20:41175371|41175587 hsa-miR-661 1 0 0
chr20:41175371|41175587 hsa-miR-765 1 0 0
chr20:41175371|41175587 hsa-miR-4270 1 0 0
chr20:41175371|41175587 hsa-miR-4281 1 0 0
chr20:41175371|41175587 hsa-miR-3714 0 1 0
chr20:41175371|41175587 hsa-miR-3921 0 1 0
chr20:41175371|41175587 hsa-miR-4466 1 0 0
chr20:41175371|41175587 hsa-miR-4490 0 1 0
chr20:41175371|41175587 hsa-miR-2392 1 1 0
chr20:41175371|41175587 hsa-miR-4507 1 0 0
chr20:41175371|41175587 hsa-miR-4534 1 1 0
chr20:41175371|41175587 hsa-miR-4651 1 0 0
chr20:41175371|41175587 hsa-miR-4660 1 0 0
chr20:41175371|41175587 hsa-miR-4683 1 0 0
chr20:41175371|41175587 hsa-miR-4692 0 1 0
chr20:41175371|41175587 hsa-miR-5047 0 1 0
chr20:41175371|41175587 hsa-miR-5787 1 0 0
chr20:41175371|41175587 hsa-miR-8078 1 0 0
chr20:41175371|41175587 hsa-miR-8082 1 1 0
chr20:41175371|41175587 hsa-miR-8089 1 1 0
chr20:41175371|41175587 hsa-miR-12119 0 1 0
chr20:41175371|41175587 hsa-miR-12128 1 1 0
chr20:41175371|41175587 hsa-miR-4433b-3p 1 0 0
chr20:41175371|41175587 hsa-miR-4433a-3p 1 0 0
chr20:41175371|41175587 hsa-miR-133a-5p 0 1 0
chr20:41175371|41175587 hsa-miR-3150a-3p 1 0 0
chr20:41175371|41175587 hsa-miR-6861-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6825-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6728-5p 1 0 0
chr20:41175371|41175587 hsa-miR-5187-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6089 1 1 0
chr20:41175371|41175587 hsa-miR-6757-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6880-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6890-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6741-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6759-5p 1 0 0
chr20:41175371|41175587 hsa-miR-4655-5p 1 0 0
chr20:41175371|41175587 hsa-miR-197-5p 1 0 0
chr20:41175371|41175587 hsa-miR-5589-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6776-5p 1 1 0
chr20:41175371|41175587 hsa-miR-3605-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6716-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6748-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6793-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6796-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6881-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6782-5p 1 0 0
chr20:41175371|41175587 hsa-miR-3150b-3p 1 0 0
chr20:41175371|41175587 hsa-miR-5008-5p 0 1 0
chr20:41175371|41175587 hsa-miR-6786-5p 1 0 0
chr20:41175371|41175587 hsa-miR-1226-5p 0 1 0
chr20:41175371|41175587 hsa-miR-1229-5p 1 0 0
chr20:41175371|41175587 hsa-miR-4640-5p 1 0 0
chr20:41175371|41175587 hsa-miR-3127-5p 1 0 0
chr20:41175371|41175587 hsa-miR-1228-5p 1 0 0
chr20:41175371|41175587 hsa-miR-149-3p 1 0 0
chr20:41175371|41175587 hsa-miR-6802-5p 1 0 0
chr20:41175371|41175587 hsa-miR-1250-5p 1 0 0
chr20:41175371|41175587 hsa-miR-5004-5p 0 1 0
chr20:41175371|41175587 hsa-miR-670-5p 0 1 0
chr20:41175371|41175587 hsa-miR-4763-3p 1 0 0
chr20:41175371|41175587 hsa-miR-6769b-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6778-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6812-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6870-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6737-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6756-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6769a-5p 1 1 0
chr20:41175371|41175587 hsa-miR-6819-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6851-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6722-3p 1 0 0
chr20:41175371|41175587 hsa-miR-6779-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6780a-5p 1 0 0
chr20:41175371|41175587 hsa-miR-7111-5p 1 0 0
chr20:41175371|41175587 hsa-miR-4728-5p 1 1 0
chr20:41175371|41175587 hsa-miR-5196-5p 1 1 0
chr20:41175371|41175587 hsa-miR-328-5p 1 0 0
chr20:41175371|41175587 hsa-miR-449c-5p 1 1 0
chr20:41175371|41175587 hsa-miR-4685-5p 1 0 0
chr20:41175371|41175587 hsa-miR-4701-3p 1 0 0
chr20:41175371|41175587 hsa-miR-4725-3p 1 0 0
chr20:41175371|41175587 hsa-miR-6777-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6846-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6858-5p 0 1 0
chr20:41175371|41175587 hsa-miR-6883-5p 1 1 0
chr20:41175371|41175587 hsa-miR-939-5p 1 0 0
chr20:41175371|41175587 hsa-miR-4758-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6511b-5p 1 1 0
chr20:41175371|41175587 hsa-miR-3940-5p 1 0 0
chr20:41175371|41175587 hsa-miR-7151-3p 0 1 0
chr20:41175371|41175587 hsa-miR-4700-5p 1 1 0
chr20:41175371|41175587 hsa-miR-4747-5p 1 0 0
chr20:41175371|41175587 hsa-miR-6876-5p 0 1 0
chr20:41175371|41175587 hsa-miR-3689d 1 0 0
chr20:41175371|41175587 hsa-miR-4769-3p 0 1 0
chr20:41175371|41175587 hsa-miR-3059-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:41175371|41175587
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MQQGWQLHSAPNCLYPTHPGVRQLLNPFFIPQGKHTES
Nucleotide Sequence CTGCAGCAAGGATGGCAGCTTCATTCAGCACCTAACTGCCTGTACCCCACCCACCCAGGAGTCAGGCAACTCCTCAATCCCTTTTTCATTCCTCAGGGAAAGCATACTGAGTCT
CircID chr20:41175371|41175587
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence LRPRAWTPASVLRGEGCLSNLPISIPGSFYQLEAAARMAASFST
Nucleotide Sequence TTGCGCCCACGGGCCTGGACCCCGGCCTCTGTCCTCAGAGGTGAGGGCTGCCTTTCTAACCTTCCCATCTCCATCCCTGGATCTTTTTACCAGTTAGAAGCTGCAGCAAGGATGGCAGCTTCATTCAGCACCTAA
CircID chr20:41175371|41175587
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MEMGRLERQPSPLRTEAGVQARGRK
Nucleotide Sequence ATGGAGATGGGAAGGTTAGAAAGGCAGCCCTCACCTCTGAGGACAGAGGCCGGGGTCCAGGCCCGTGGGCGCAAA
CircID chr20:41175371|41175587
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MLSLRNEKGIEELPDSWVGGVQAVRC
Nucleotide Sequence ATGCTTTCCCTGAGGAATGAAAAAGGGATTGAGGAGTTGCCTGACTCCTGGGTGGGTGGGGTACAGGCAGTTAGGTGCTGA
CircID chr20:41175371|41175587
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MVKRSRDGDGKVRKAALTSEDRGRGPGPWAQ
Nucleotide Sequence CTGGTAAAAAGATCCAGGGATGGAGATGGGAAGGTTAGAAAGGCAGCCCTCACCTCTGAGGACAGAGGCCGGGGTCCAGGCCCGTGGGCGCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab